Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3 120 9e-22 seq1 95.1 4e-14 >seq3 Length=2410059 Score = 120 bits (132), Expect = 9e-22 Identities = 187/263 (71%), Gaps = 6/263 (2%) Strand=Plus/Minus Query 302584 TTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGA 302643 |||| | |||||||||||| |||||||| || || || || || ||||| || ||| Sbjct 1516884 TTGACGAGACGACGCTGAATGTAACCAGTCTCAGCGGTCTTAACCGCAGTATCGATAAGA 1516825 Query 302644 CCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAA 302702 || |||||||||||||||| |||||||| | ||| | ||| ||| || || | || | Sbjct 1516824 CCCTCACGACCACCCATAGCGTGGAAGAAGAACTCCTGCGG-CGTGAGACCACGAAGGTA 1516766 Query 302703 GGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAG 302762 ||| | || ||||||||||||| |||||| || |||| ||||| || || || || Sbjct 1516765 CGAGTTTTCGACGAAACCACGCGACTCGGGTCCATAGTCGTCCTTGGAGAAATGGGGAAG 1516706 Query 302763 GGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCA 302822 || | || | ||| | || || ||||| || || || ||||||| || | || Sbjct 1516705 CGTGCGGTGACGGAAACCGAAAGGAATGCGCTTGCCTTCGACAATCTGCTGGCCGACACA 1516646 Query 302823 --CGAAATCATCTGCGAAATATT 302843 || | ||| |||||||| || Sbjct 1516645 ACCGGA--CATTTGCGAAATGTT 1516625 Score = 114 bits (126), Expect = 4e-20 Identities = 364/560 (65%), Gaps = 7/560 (1%) Strand=Plus/Minus Query 155969 CTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGG 156028 |||||| | ||||| ||||| || || || | ||| || | || | ||| || Sbjct 1854303 CTCCTCCTTTCCGTGGTTCTTACGGAGGTCGAGGAAGTCGAAGACGTCCGCATGCCAAGG 1854244 Query 156029 CTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGC 156085 ||| || || || ||||| ||| | ||| || ||||| || || || || || Sbjct 1854243 CTCAAGGTAGATGGCAAAGGCACCGGGGCGCTTATTACCGCCCTGGTCGACGTAGCGGGC 1854184 Query 156086 AGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCG 156145 |||| | | || ||| ||||| |||| |||||| ||||| || ||||| || Sbjct 1854183 AGTCGCGTCGTAGGCACGGAGCATGGGAACAATACCGTTGGAGTAACCGTTGGTGCCAGC 1854124 Query 156146 AATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTT 156205 ||| | ||| || | || | || || || || || || ||||| || | || Sbjct 1854123 AATGTACGAGCCCTTGGCACGGATGTTGTGGATGTGGAGACCGATACCGCCGGCAGTCTT 1854064 Query 156206 AGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 || || |||||||| ||| | ||| | | | ||||| || ||||| ||||| | ||| Sbjct 1854063 GGAGATCTGAGCGCAGGTCTTGAGAGTGTCGTAGATACCGTCGATAGAGTCATCCTTCAT 1854004 Query 156266 TGATAGTAGATAGCACGA--ACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTA 156323 | | || |||| || || | | | ||| ||| || ||||||||||| || ||| Sbjct 1854003 CGCGACGAGGAAGCATGACGACATC-TGGGGGTGCTGG-GTACCAGCGTTGAAGAGAGTA 1853946 Query 156324 GGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCA 156383 || | || || | || || | ||||| | ||| ||||| | | ||| ||| Sbjct 1853945 GGCGAGGCGTGGGTGAAGTAGCGCTCGGACATGAGGTTGTAGGTCTCAATGACCTTTTCA 1853886 Query 156384 AGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACA 156443 | || ||||| |||| ||||| || | ||| ||| ||||| |||||||| || Sbjct 1853885 ATGTTGTCGCCGTGGATACCAATAGAAACACGCATGATCATGTGCTGGGGACGCTCGGCA 1853826 Query 156444 ATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCA 156503 | | || ||||| |||| ||||||| ||| || || || || || ||||| || | Sbjct 1853825 ACCTTGCCGTCAATGCGCAAGAGGTATGAGCGCTCAAGCGTCTTGAAACCGAAGTAGTTG 1853766 Query 156504 AACAGAAAATCACGGTTGTA 156523 | ||| ||||||| ||| Sbjct 1853765 TAAGCAAAGTCACGGTCGTA 1853746 >seq1 Length=5410471 Score = 95.1 bits (104), Expect = 4e-14 Identities = 177/258 (69%), Gaps = 4/258 (2%) Strand=Plus/Minus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 || || | |||||||| | ||| || |||| | | | || || || | || || | Sbjct 5377226 GCCATTAAACCACACTGGTCACAGACGTGGAGACGGAACGCGTCCGACGACTCGTACATG 5377167 Query 251464 CGACCCTTGGTGAAGC--GAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCAC 251521 || ||||| ||| | | ||| | |||| || ||||| || || | ||||| |||| Sbjct 5377166 CGCTCCTTGAGGAAACCGGCGATTC--CGTGCGAGATCATGCAGTCTCTTTCCATCTCAC 5377109 Query 251522 CGAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCA 251581 ||||||||||||||||||| || | | |||||| | ||||| || || ||| | || Sbjct 5377108 CGAAACGAAGACCACCATCACGCGAACGACCCTCAACTGGCTGGCGGGTAAGAATCTGCA 5377049 Query 251582 TAGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGA 251641 |||||| | || || ||| |||| ||||| |||||||||||||||||| Sbjct 5377048 GAGGACCACGAGCACGCGCGTGGATCTTGTCATCCACCATGTGCTTGAGACGCTGGTAGT 5376989 Query 251642 ATGCGGGACCGATGAAGA 251659 | | ||||| | | ||| Sbjct 5376988 AGGTCGGACCAAAGTAGA 5376971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817298277392