Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq12 208 9e-48 seq3 168 8e-36 seq2 149 8e-30 seq1 125 9e-23 seq5 123 3e-22 >seq12 Length=785499 Score = 208 bits (230), Expect = 9e-48 Identities = 193/245 (79%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 868690 CGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGAT 868749 || |||||||||| | |||||| |||||| ||||||| |||||||| |||||||| Sbjct 745313 CGACTTGGCGTACGCAGACACGCGGGACTCGAAGAAGTTGGCCTTGCCCTGCAGCGAGAT 745372 Query 868750 CAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGC 868809 || |||||| | ||| ||||||| || |||||| ||| ||| ||||| | | Sbjct 745373 CATCTCCATAAAGTCGAAGGGGTTGGTCGACTTGTAAATCTTCTCGTTGCCGAGGGCGAC 745432 Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 |||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct 745433 GAGCAGACGGTCGGCGACAAACTCAATGTACTGGCACATGAGGTTGGCGTTCATGCCGAT 745492 Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929 ||| | ||| || || | |||| | | ||||| | ||| |||| |||||||||| ||| Sbjct 745493 GAGAGACACGGGGAGAGCCTCGGTGAGGAACTCCTGCTCAATCTTGACGGCCTCGCGGAT 745552 Query 868930 GATCT 868934 ||||| Sbjct 745553 GATCT 745557 Score = 131 bits (144), Expect = 2e-24 Identities = 202/286 (71%), Gaps = 3/286 (1%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| ||| ||| | |||||| |||| |||||| ||||||||||| ||||| Sbjct 745628 ACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATGAGGCCACGCTT 745687 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| ||||||| | || || ||||| ||||| ||||| ||||||||||| Sbjct 745688 CTTGAGCCAGAAGATGGAGGCAAACGATCCAGAGAAGAAGATACCCTCAACGGCGGCAAA 745747 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 | | ||||| ||||| |||||| | ||| || || | |||||| | ||||| Sbjct 745748 GGCAATGAGACGCTCCGCAAAG--GACGA-GCTGTCGTCCGAGATCCAACGAAGAGCCCA 745804 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418 ||||||||| ||| | | | || | || ||||| || ||||||| | Sbjct 745805 GTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATAGCTTTGAAGAGGTACTGACGACG 745864 Query 869419 GGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTCC 869464 || ||| || ||||||||||| ||||| || ||||||||| Sbjct 745865 AGCGTTGTCACGGATGTAGGTGTCGATAAGGAGAGAGTAGGTCTCC 745910 Score = 100 bits (110), Expect = 3e-15 Identities = 148/206 (72%), Gaps = 8/206 (4%) Strand=Plus/Plus Query 1573902 CCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGGCGCGGCC 1573961 ||||| | || || |||||| |||| ||||| |||| | || | |||| || Sbjct 331540 CCCGGTATTGGAAAAACCACGTCCATCCACTGTCTCGCGCACGCGCTGCTCGGCGACGCG 331599 Query 1573962 GCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGTCGTGCGC 1574021 | | |||| |||||| || || |||||||| ||||||||||| ||||||||||||| Sbjct 331600 TACAAGGAGGGCGTGCTGGAGCTGAACGCGTCCGACGAGCGCGGTATCGACGTCGTGCGT 331659 Query 1574022 AAGATCATCAAGCACCACGCCTCCA-AGAGG--ATCGACC-TGCCGCCCGGACGCCACAA 1574077 || | |||||| || | || || || | |||| ||||||| |||||||| || Sbjct 331660 AACAAGATCAAG----TCGTTTGCACAGCGGAAAGTGACCTTGCCGCCGGGACGCCATAA 331715 Query 1574078 GGTGATCATCCTCGACGAGGCCGACT 1574103 | | |||| ||||||||||| |||| Sbjct 331716 GATTGTCATTCTCGACGAGGCGGACT 331741 >seq3 Length=2410059 Score = 168 bits (186), Expect = 8e-36 Identities = 219/303 (72%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || ||||||||||||||| || || ||| || | ||||||||||| || | ||||| Sbjct 1854204 GCCCTGGTCGACGTAGCGGGCAGTCGCGTCGTAGGCACGGAGCATGGGAACAATACCGTT 1854145 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 ||| | ||||||||||| || | ||| | ||| ||| || | ||||| | | Sbjct 1854144 GGAGTAACCGTTGGTGCCAGCAATGTACGAGCCCTTGGCACGGATGTTGTGGATGTGGAG 1854085 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 ||||| |||||||| | ||||||||| | ||||| ||||| ||||||||||| || Sbjct 1854084 ACCGATACCGCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTTGAGAGTGTCGTAGATACC 1854025 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 ||||| ||||| ||||||| | ||||| ||||| ||||| | || |||||| || Sbjct 1854024 GTCGATAGAGTCATCCTTCATCGCGACGAGGAAGCATGACGACATCTGGGGGTGCTGGGT 1853965 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA 1630361 || ||||||||||| || |||| || |||||| | || |||||| || ||| Sbjct 1853964 ACCAGCGTTGAAGAGAGTAGGCGAGGCGTGGGTGAAGTAGCGCTCGGACATGAGGTTGTA 1853905 Query 1630362 GGT 1630364 ||| Sbjct 1853904 GGT 1853902 Score = 149 bits (164), Expect = 8e-30 Identities = 163/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| || || ||| | | ||| ||||| ||||||||||||||||| |||| || Sbjct 657809 GCTTGGAGAGCTCACCGGGGAGGATGAGGCGGACGGCGGTCTGGATCTCACGCGACGAGA 657750 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||| | ||| | ||| || | ||||||||| ||||||| || | | Sbjct 657749 TGGTCGAGCGGTGGTTGTACGACGCGAGCTTGGACGCCTCGGTGGCGATGCGCTCAAAGA 657690 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||| ||||||||||| | || | ||||| |||||||||||| || |||||||| Sbjct 657689 TGTCGGACACAAACGAGTTGAGGATGGCCATCGCCTTGTTGGAGATACCAGTGTCGGGGT 657630 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | ||||||||||| |||||||||||| |||||||||| Sbjct 657629 GGACCTGCTTGAGGACCTTGTAGATGTACGACGAGTA 657593 Score = 116 bits (128), Expect = 5e-20 Identities = 317/489 (65%), Gaps = 10/489 (2%) Strand=Plus/Minus Query 1628110 GGCAGGGCCA-CGCTGGAA---AGGTTGCAAGTCGCCACTTCCGTGGGCGACGAAAACTG 1628165 ||||||| | || ||||| |||||||| || || || ||| | || ||| Sbjct 1854696 GGCAGGGAGAGCGATGGAAGCAAGGTTGCAGACGGCGACCTCGTCGGGGGCAGAGTACTC 1854637 Query 1628166 GACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGT 1628225 || ||||||||||| ||||||| ||| | | || || |||| ||||||||||| | Sbjct 1854636 GATAATCTCGGTGCAGAGGTTGGAAGACTTGATAGTGCCGAGGTGCTGCTGGTTGGACTT 1854577 Query 1628226 CAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGAC 1628285 ||||| | |||||||||| |||||| |||| | || |||||| |||| ||| | | Sbjct 1854576 GCGGTTGGCAGCGTCCTTGTAAAGCATGAAGGGACCACCAGTCTCGGTCTGAGCCTCAAG 1854517 Query 1628286 GATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCC-GCGCGCG--GCCCTNNNNNNN 1628342 ||| || |||||| || | || | || ||| ||| | ||||| Sbjct 1854516 GATAGCAAACCAGAGCTTCTGAGC---CTTGATGGTCTTGCGGCCCTTGCCCTCGCGCTC 1854460 Query 1628343 NNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCCTC 1628402 ||||| || | || | ||| || ||||| ||| Sbjct 1854459 GTACTTTTCGTAGAGAGCCTCAAACTCCTCCGAGTGGACGTCGGCAAGACCGGGGCACTC 1854400 Query 1628403 GGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACA 1628462 || || || | ||| | ||| ||||| | | | | |||| ||| |||||||| Sbjct 1854399 GGCAGGGCACATGAGAGTCCACTCGCCGTCCGCCTCAACGCGCTTCATGAAGAGGTCGGG 1854340 Query 1628463 CGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTT 1628522 ||| || ||||| || ||||| || || || ||||||||| ||||||||||| Sbjct 1854339 AACCCAGAGGGCGTAGAACAGGTCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTACG 1854280 Query 1628523 GAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCC 1628582 ||||||||| |||||| | ||| || ||||| ||||| |||||| ||||||||| || Sbjct 1854279 GAGGTCGAGGAAGTCGAAGACGTCCGCATGCCAAGGCTCAAGGTAGATGGCAAAGGCACC 1854220 Query 1628583 CTTGCGCTT 1628591 |||||| Sbjct 1854219 GGGGCGCTT 1854211 >seq2 Length=4291162 Score = 149 bits (164), Expect = 8e-30 Identities = 186/255 (73%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 18228 GCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGG 18287 |||| |||| ||| |||| |||||||||||||| ||| ||||| |||| ||||| Sbjct 1228436 GCGCTCCGAGTTCGACACCGTCCACATCCAGTCGGGCATTGAGCACGGCGTCACCCTCGG 1228377 Query 18288 CTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACAT 18347 | | ||| ||||| | |||| |||| |||||||| || |||||| |||| | Sbjct 1228376 CACACCCATCGGCATGCTTGTCCACAACAAGGACCAGCGCCCGCACGACTACACCGAGAC 1228317 Query 18348 GTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAA 18407 | | || || ||||| |||||||||||||||||| | |||||||||||| | || Sbjct 1228316 CGACCTGTACCCCCGCCCCTCGCACGCCGACTACACCTACCTCGCCAAGTACGGCGTGAA 1228257 Query 18408 GGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGG 18467 |||||||||||| || ||||| | || || |||||||| | || ||||| ||||| Sbjct 1228256 GGCGTCGTCGGGTGGTGGCCGCGCTTCGGCGCGCGAGACTATTGGCCGTGTCGCTGCCGG 1228197 Query 18468 CGCGGTCGCCGAGAA 18482 || | || ||||| Sbjct 1228196 TGCCATTGCGGAGAA 1228182 Score = 120 bits (132), Expect = 4e-21 Identities = 128/164 (78%), Gaps = 4/164 (2%) Strand=Plus/Minus Query 19031 CGCCAAGCGCCAAGAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCC 19090 ||||||| || || ||| ||||||| || || || ||||| || ||| |||| Sbjct 1227971 CGCCAAGGCCCGCGACGACTCGCTCGGCGGAACCGTCACATGCGTTATCCGTAAC-TGCC 1227913 Query 19091 GGCA-GGCCTCGGCGAGCCGTGCTTT-GACAAGATCGAGGCCGCGCTCGCCCACGCCATG 19148 || |||||||||||||| ||| || |||||| ||||||||| ||||||||||||||| Sbjct 1227912 CGCTCGGCCTCGGCGAGCC-TGCGTTCGACAAGCTCGAGGCCGTCCTCGCCCACGCCATG 1227854 Query 19149 CTGTCGATCCCGGCCACCAAGGGATTCGAGATTGGCAGCGGGTT 19192 || || ||||| |||||||||| |||||||||||| ||| || Sbjct 1227853 CTCTCCATCCCCTCCACCAAGGGCTTCGAGATTGGCTCCGGTTT 1227810 Score = 86.0 bits (94), Expect = 8e-11 Identities = 118/163 (72%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 1726685 TGCGGCTGGGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCCACGCTCCCGTCGGTGCCG 1726744 || || ||| ||||| ||| ||||||||| || | | || |||||||||||| Sbjct 2190546 TGGGGGTGGTTGGCGGACTGCATGGCGTCGAGGGCGACAGTGAGGCCGCCGTCGGTGCCG 2190487 Query 1726745 TTCTTGAAGCCGATGGCCA--GCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCT 1726802 |||||||||||||||| | | |||| | ||||| | ||| ||||||| ||| || Sbjct 2190486 TTCTTGAAGCCGATGGGGAACGAGGCA--CCGGACGCGAGCTCACGGTGCAGCTGCGACT 2190429 Query 1726803 CGGTCGTGCGCGCGCCCACGGCGCCCCACGCCACCAGGTCTGC 1726845 | || || |||||||| | |||||||||| | ||||| || Sbjct 2190428 CAGTGGTACGCGCGCCAATTGCGCCCCACGAGATGAGGTCGGC 2190386 >seq1 Length=5410471 Score = 125 bits (138), Expect = 9e-23 Identities = 117/146 (80%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 868704 CGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACG 868763 ||| ||||||| |||||||||||||| ||||| | |||||||| | ||||||||| Sbjct 365013 CGCTCACGCGCGACTCGAAAAAGTTGGCTTTGCCTTGCAGCGAGATGAGCTCCATCCAGT 364954 Query 868764 GGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAG-CAGGCGGTCG 868822 ||| ||||||| || | |||| ||| || | ||||||| || || |||||||||| Sbjct 364953 CGAAGGGGTTGGTCGCGTGGTAGATCTTGTCATAGCCGAGCG-CGACAGTCAGGCGGTCG 364895 Query 868823 GCGACAAACTCGATGTACTGGCACAT 868848 ||||||||||| |||||||||||||| Sbjct 364894 GCGACAAACTCCATGTACTGGCACAT 364869 Score = 100 bits (110), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 10/195 (5%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || |||||||| ||| | |||||| |||| |||||| |||| || |||||||| Sbjct 364653 CCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGGCCGCGCATAAGCCCGCGCTTT 364594 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| ||||||||| || |||||||| ||||||||||||||| ||||| Sbjct 364593 TTGAGCCAGAAGATGGCGGCAAACGACCCCGAGAAGAAGATGCCCTCGACGCACGCAAAC 364534 Query 869300 CCGATGAGCC--GCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCC 869357 |||| | || | |||| |||| | ||| | |||| |||| | |||| Sbjct 364533 GCGATCAACCGTGTTCGG--AAGG------GCATCTCGTCCGTGATGTACTTTAGTGCCC 364482 Query 869358 AGTCGGCCTTTTTCC 869372 ||||||||||||||| Sbjct 364481 AGTCGGCCTTTTTCC 364467 >seq5 Length=1777877 Score = 123 bits (136), Expect = 3e-22 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 92603 GGCGATCTGGCGCGTGAGGGCCTCCTGCACCTGGAAGCGGTCGGAAAACATGTCGACGAT 92662 ||||| ||| |||||| |||||| ||||| | |||| |||||| | ||| | || Sbjct 761035 GGCGACCTGCTTGGTGAGGCGCTCCTGGACCTGCAGGCGGCGAGAAAACGTCTCGGCAAT 761094 Query 92663 GCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGT-GGGCAGGTAGCCCACGTGGGCCT 92721 |||| || |||||| || |||| || | || || ||| | |||||| | | | || Sbjct 761095 ACGCGCGAGCTTGCTGAGTCCGA-GAACGAGCTTGTTGGGGATGTAGCCGATGGAGATCT 761153 Query 92722 TGCCCATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCGACGTCGCGCACGA 92781 ||||| | ||||||| || ||||||||||||| ||| | | ||| | ||||||||||| Sbjct 761154 TGCCCGTGAAGGGCACCATGTGGTGCTCGCACAGCGAGTAGACGTCAATGTCGCGCACGA 761213 Query 92782 TCACCATCTCGCCCGAGGCCTCGGCAAAGAGCGCGTC 92818 | ||||||||| | | |||| ||||| | |||||| Sbjct 761214 TGACCATCTCGTCGTGGTCCTCCGCAAACACCGCGTC 761250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107137886965072