Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq3 105 6e-18 seq12 104 2e-17 >seq3 Length=2410059 Score = 105 bits (116), Expect = 6e-18 Identities = 426/665 (64%), Gaps = 21/665 (3%) Strand=Plus/Minus Query 139297 TCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCG 139356 ||||||||||||||||||||||| | || || || || | |||| | |||| || Sbjct 1854467 TCGCGCTCGTACTTTTCGTAGAGAGCCTCAAACTCCTCCGAGTGGACGTCGGCAAGACCG 1854408 Query 139357 CGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAAC 139416 | |||| | |||| |||||||| | ||| |||||| ||||| |||||| ||||||| Sbjct 1854407 GGGCACTCGGCAGGGCACATGAGAGTCCACTCGCCGTCCGCCTCAACGCGCTTCATGAAG 1854348 Query 139417 AGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGC-----CTTCTTATCTTCCGAAC 139471 || || |||| ||| | ||| | | || || || || | || | ||||| Sbjct 1854347 AGGTCGGGAACCCAGAGGGCGTAGAACAGGTCACGGGCACGAACCTCCTCCTTTCCG--T 1854290 Query 139472 CCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGA 139531 | ||||| | || ||||| || || ||||| || ||||| || || || |||| Sbjct 1854289 GGTTCTTACG---GAGGTCGAGGAAGTCGAAGACGTCCGCATGCCAAGGCTCAAGGTAGA 1854233 Query 139532 TGGCCATTGCGCCTTTCCG---TTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGA 139588 |||| | || || || || || || || ||||||| || ||| | | Sbjct 1854232 TGGCAAAGGCACCGGGGCGCTTATTACCGCCCTGGTCGACGTAGCGGGCAGTCGCGTCGT 1854173 Query 139589 ATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATG---GGAC 139645 | | || | ||| || | | |||| | | |||||||||| | ||| | | Sbjct 1854172 AGGCACGGAGCATGGGAACAATACCGTTGGAGTAACCGTTGGTGCCAGCAATGTACGAGC 1854113 Query 139646 TGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTA 139705 ||| || |||| || || | | || ||||| |||||| || ||||| || Sbjct 1854112 CCTTG---GCACGGATGTTGTGGATGTGGAGACCGATACCGCCGGCAGTCTTGGAGATCT 1854056 Query 139706 AAACGCA-ATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACC 139764 | |||| || | | || ||||| ||||| || ||| |||| ||||| ||| Sbjct 1854055 GAGCGCAGGTCTTG-AGAGTGTCGTAGATACCGTCGATAGAGTCATCCTTCATCGCGACG 1853997 Query 139765 AGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCG 139824 || ||||||||||| | || || | | || || || || |||||||| ||| Sbjct 1853996 AGGAAGCATGACGACATCTGGGGGTGCTGGGTACCAGCGTTGAAGAGAGTAGGCGAGGCG 1853937 Query 139825 TGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTT 139884 || ||||| | | ||||| | | ||| || || ||| | | |||| | Sbjct 1853936 TGGGTGAAGTAGCGCTCGGACATGAGGTTGTAGGTCTCAATGACCTTTTCAATGTTGTCG 1853877 Query 139885 CCGTGGATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCC 139944 ||||||||||| | ||| || ||||| | ||| || ||| || ||||| ||| ||| Sbjct 1853876 CCGTGGATACCAATAGAAACACGCATGATCATGTGCTGGGGACGCTCGGCAACCTTGCCG 1853817 Query 139945 TCGAT 139949 || || Sbjct 1853816 TCAAT 1853812 >seq12 Length=785499 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || ||||| || || || | | Sbjct 767867 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACGATCACGCTTGAGGTCGAGTCGTCG 767926 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || ||||| || || Sbjct 767927 GACACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 767986 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||| || || ||||| ||||| | | |||| || || ||| Sbjct 767987 CAGCGCCTGATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGCACGCTGTCGGACTACAAC 768046 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| ||||| || ||| | || | || ||||||| || Sbjct 768047 ATTCAGAAGGAGTCGACCCTGCACCTTGTTCTCCGTCTGCGCGGTGG 768093 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| |||| || || || || || || ||||| ||||| || || | || Sbjct 768095 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACGATTACTCTCGAGGTCGAGTCGTCC 768154 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | ||||| || ||||| || || || ||||| || || Sbjct 768155 GACACCATCGACAACGTTAAGGC-GAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCA 768213 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | ||||| || || || ||||| ||||| | | |||| || || || Sbjct 768214 GCAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGACGGTCGTACGCTGTCGGACTACAA 768273 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| ||||| || ||| | || | || |||| |||||| Sbjct 768274 CATCCAGAAGGAGTCGACCCTCCACCTCGTCCTCCGTCTGCGTGGAGGC 768322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897510020480