Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq12 210 3e-48 seq3 188 1e-41 seq1 118 2e-20 seq9 107 3e-17 seq5 98.7 2e-14 >seq12 Length=785499 Score = 210 bits (232), Expect = 3e-48 Identities = 200/254 (79%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| |||| |||||| ||| | |||||| |||||| ||||||| |||||||| | Sbjct 745306 TGACACCCGACTTGGCGTACGCAGACACGCGGGACTCGAAGAAGTTGGCCTTGCCCTGCA 745365 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 ||||||||| |||||| | ||| ||||||| || | ||| ||||||| |||| Sbjct 745366 GCGAGATCATCTCCATAAAGTCGAAGGGGTTGGTCGACTTGTAAATCTTCTCGTTGCCGA 745425 Query 794011 G--CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068 | ||||| ||||| ||||||||||| || ||||||||||||||||||||| |||||| Sbjct 745426 GGGCGACG--AGCAGACGGTCGGCGACAAACTCAATGTACTGGCACATGAGGTTGGCGTT 745483 Query 794069 CATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128 |||||||||||| | |||||| || | |||| ||| ||||| | ||| |||| |||||| Sbjct 745484 CATGCCGATGAGAGACACGGGGAGAGCCTCGGTGAGGAACTCCTGCTCAATCTTGACGGC 745543 Query 794129 CTCGATGATGATCT 794142 |||| |||||||| Sbjct 745544 CTCGCGGATGATCT 745557 Score = 132 bits (146), Expect = 8e-25 Identities = 214/302 (71%), Gaps = 7/302 (2%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| ||| ||| | |||||| ||| |||||| ||||||||||| ||||| Sbjct 745628 ACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATGAGGCCACGCTT 745687 Query 794400 CTTGAGCCAAAAGATGGCACAGAAAC-TGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 ||||||||| ||||||| | |||| || ||||| ||||| ||||| |||||||||| Sbjct 745688 CTTGAGCCAGAAGATGG-AGGCAAACGATCCAGAGAAGAAGATACCCTCAACGGCGGCAA 745746 Query 794459 AGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCC 794518 || | | ||| ||||| ||||| | | || || | |||||| | |||| Sbjct 745747 AGGCAATGAGACGCTCCGCAAA---GGACGAGCTGTCGTCCGAGATCCAACGAAGAGCCC 745803 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 | || ||||| ||| | | |||| | || ||||| || ||||||| | Sbjct 745804 AGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATAGCTTTGAAGAGGTACT-GACGA 745862 Query 794579 CGACCG-GGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTT 794637 ||| || ||| || |||||||||||| ||||| ||||||||||| ||||| ||||| Sbjct 745863 CGAGCGTTGTCACGGATGTAGGTGTCGATAAGGAGAGAGTAGGTCTCCGAGTGAATGTTC 745922 Query 794638 TC 794639 || Sbjct 745923 TC 745924 Score = 87.8 bits (96), Expect = 3e-11 Identities = 144/205 (70%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 2019039 CCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGGCGCGGCC 2019098 ||||| | || || |||||| |||| || || |||| || ||| | |||| || Sbjct 331540 CCCGGTATTGGAAAAACCACGTCCATCCACTGTCTCGCGCACGCGCTGCTCGGCGACGCG 331599 Query 2019099 GCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCGTGCGT 2019158 | | |||| |||||| || || || ||||| ||||||||||| | |||||||||||| Sbjct 331600 TACAAGGAGGGCGTGCTGGAGCTGAACGCGTCCGACGAGCGCGGTATCGACGTCGTGCGT 331659 Query 2019159 AGAATCATCAAG--CATCACGCTTCGAAAAGAATCGACC-TGCCGCCCGGCCGCCACAAG 2019215 | | |||||| | | | || |||| |||| ||||||| || ||||| ||| Sbjct 331660 AACAAGATCAAGTCGTTTGCACAGCGGAAAG---TGACCTTGCCGCCGGGACGCCATAAG 331716 Query 2019216 GTGATCATCCTCGATGAGGCCGACT 2019240 | |||| ||||| ||||| |||| Sbjct 331717 ATTGTCATTCTCGACGAGGCGGACT 331741 >seq3 Length=2410059 Score = 188 bits (208), Expect = 1e-41 Identities = 197/256 (77%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||||||||| |||| ||||||| ||| || || ||| | | Sbjct 657847 GTACTTGGTGACGGCCTTGGTACCCTCGGAGATGGCGTGCTTGGAGAGCTCACCGGGGAG 657788 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 ||| ||||| ||||||||||||||||| || | ||| || ||| | ||| || || Sbjct 657787 GATGAGGCGGACGGCGGTCTGGATCTCACGCGACGAGATGGTCGAGCGGTGGTT-GTACG 657729 Query 1485591 -CGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| || | ||||||||| ||||||| || | |||||| ||||||||||| | Sbjct 657728 ACGCGAGCTTGGACGCCTCGGTGGCGATGCGCTCAAAGATGTCGGACACAAACGAGTTGA 657669 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 ||| | ||||| ||||||||||| || ||||||||| ||||||||||| ||||||| Sbjct 657668 GGATGGCCATCGCCTTGTTGGAGATACCAGTGTCGGGGTGGACCTGCTTGAGGACCTTGT 657609 Query 1485710 AAACAAAGGACGAGTA 1485725 | | | |||||||| Sbjct 657608 AGATGTACGACGAGTA 657593 Score = 145 bits (160), Expect = 1e-28 Identities = 190/263 (72%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || ||||||||| ||||| || || ||| || | ||||||||||| |||| ||||| Sbjct 1854204 GCCCTGGTCGACGTAGCGGGCAGTCGCGTCGTAGGCACGGAGCATGGGAACAATACCGTT 1854145 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 ||| | ||||||||||| || | ||| | |||| ||| || | ||||| | | Sbjct 1854144 GGAGTAACCGTTGGTGCCAGCAATGTACGAGCCCTTGGCACGGATGTTGTGGATGTGGAG 1854085 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 ||||| |||||||| | ||||||||| | ||||| | || || || |||||||| || Sbjct 1854084 ACCGATACCGCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTTGAGAGTGTCGTAGATACC 1854025 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 ||||| ||||| ||||||| | | || ||||| ||||| | || ||| || || Sbjct 1854024 GTCGATAGAGTCATCCTTCATCGCGACGAGGAAGCATGACGACATCTGGGGGTGCTGGGT 1853965 Query 2073777 GCCGGCATTGAAGAGCGTGGGCG 2073799 || || |||||||| || |||| Sbjct 1853964 ACCAGCGTTGAAGAGAGTAGGCG 1853942 Score = 131 bits (144), Expect = 3e-24 Identities = 280/424 (66%), Gaps = 8/424 (2%) Strand=Plus/Minus Query 2071584 CTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTT 2071643 ||||||||| ||||||| ||| | | ||||| |||| |||||||||| | |||| Sbjct 1854630 CTCGGTGCAGAGGTTGGAAGACTTGATAGTGCCGAGGTGCTGCTGGTTGGACTTGCGGTT 1854571 Query 2071644 GACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACGATGGC 2071703 | | |||||||||| |||||| |||| |||| |||||| |||| ||| | ||| || Sbjct 1854570 GGCAGCGTCCTTGTAAAGCATGAAGGGACCACCAGTCTCGGTCTGAGCCTCAAGGATAGC 1854511 Query 2071704 CGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCG----GCCCTNNNNNNNNNNNN 2071759 |||| | || | || || | || ||| ||||| Sbjct 1854510 AAACCAGA----GCTTCTGAGCCTTGATGGTCTTGCGGCCCTTGCCCTCGCGCTCGTACT 1854455 Query 2071760 NNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTCGGACG 2071819 |||| || ||||| | | |||| ||| || ||||| ||||| | Sbjct 1854454 TTTCGTAGAGAGCCTCAAACTCCTCCGAGTGGACGTCGGCAAGACCGGGGCACTCGGCAG 1854395 Query 2071820 GGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGCACGTCC 2071879 |||| | ||| | ||| |||||| | | | | ||||| ||| || |||||| || Sbjct 1854394 GGCACATGAGAGTCCACTCGCCGTCCGCCTCAACGCGCTTCATGAAGAGGTCGGGAACCC 1854335 Query 2071880 ACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGT 2071939 | ||| |||| || || || || || || ||||||||| ||||||||||| |||| Sbjct 1854334 AGAGGGCGTAGAACAGGTCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTACGGAGGT 1854275 Query 2071940 CGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGC 2071999 |||| |||||| || ||| || ||||| ||||| |||||| ||||||||| || || Sbjct 1854274 CGAGGAAGTCGAAGACGTCCGCATGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGGC 1854215 Query 2072000 GCTT 2072003 |||| Sbjct 1854214 GCTT 1854211 Score = 98.7 bits (108), Expect = 2e-14 Identities = 136/190 (72%), Gaps = 8/190 (4%) Strand=Plus/Plus Query 429633 ACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGAG 429692 || ||||| || ||| || |||| ||| | ||||| |||||||| ||||| ||||| Sbjct 1515752 ACTTTCCGTCTGAACTTGTCCGTTACGTCGCCATACAATGCCGACTTCGACGGTGACGAA 1515811 Query 429693 ATGAACCTGCACGTGCCCCAGTCGGAGATGGCACGCGCCGAAGTCGCCCACACCATGGGC 429752 |||||| ||||||| || ||||| ||| | | || |||||| | |||| | | || Sbjct 1515812 ATGAACTTGCACGTCCCACAGTCCGAGGAGACTCGTGCCGAACTTTCCCAGATC----GC 1515867 Query 429753 GTGGCCCTCAAGGCCG----TGTCGCCGCAGGCCAACAAGCCCATCATCGGGCTCGTGAT 429808 ||| | |||| | | | ||||| ||||||||||||||| |||| || | ||| Sbjct 1515868 ATGGGTCCCAAGACAGATCATCTCGCCTCAGGCCAACAAGCCCGTCATGGGTATTGTGCA 1515927 Query 429809 GGACGCCCTC 429818 |||| | ||| Sbjct 1515928 GGACACGCTC 1515937 Score = 93.3 bits (102), Expect = 7e-13 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 2069253 GTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCGGT 2069312 ||||||||| ||||||||||||||||| | ||| ||||| || || ||||| || ||||| Sbjct 1855602 GTCGACGGTGAACTGGATGGCGTTGGCCGAAGGACGGGTACGAAGGTAGTAGATACCGGT 1855543 Query 2069313 CTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGT 2069351 |||||| ||||| ||| ||||| |||||| || || Sbjct 1855542 CTTGAGACCGCGCTTCCAGCCGTAGAAGTGCATGGAAGT 1855504 >seq1 Length=5410471 Score = 118 bits (130), Expect = 2e-20 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 793912 CGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACG 793971 ||| ||||||| |||||||||||||| ||||| | |||||||| | ||||||||| Sbjct 365013 CGCTCACGCGCGACTCGAAAAAGTTGGCTTTGCCTTGCAGCGAGATGAGCTCCATCCAGT 364954 Query 793972 GGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGG 794031 ||| ||||||| || ||||| ||| || | ||||||| || ||||||||||| Sbjct 364953 CGAAGGGGTTGGTCGCGTGGTAGATCTTGTCATAGCCGAGCGCGACAGTCAGGCGGTCGG 364894 Query 794032 CGACGAATTCAATGTACTGGCACAT 794056 |||| || || |||||||||||||| Sbjct 364893 CGACAAACTCCATGTACTGGCACAT 364869 >seq9 Length=854214 Score = 107 bits (118), Expect = 3e-17 Identities = 146/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| || || || | ||||||| ||| || || ||| | | Sbjct 196507 TGTACTTGGTCACCGCCTTGGTGCCTTCGGAAATGGCGTGCTTGGAGAGCTCTCCGGGAA 196448 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || || |||||||||||||||||||||| ||| || ||| | ||| || | Sbjct 196447 GGATGAGACGGACGGCGGTCTGGATCTCGCGGGACGAGATGGTCGAGCGGTGGTT-GTAC 196389 Query 1485590 G-CGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | ||| || | |||||||| |||| || || | |||||| || |||||||| Sbjct 196388 GACGCGAGCTTGGATGCCTCGGTCGCGATTCGCTCAAAGATGTCGGACACGAACGAGTTG 196329 Query 1485649 ATGATCGACATCGATTTGTTG 1485669 | |||| ||||| |||||| Sbjct 196328 AGAATCGCCATCGCCTTGTTG 196308 >seq5 Length=1777877 Score = 98.7 bits (108), Expect = 2e-14 Identities = 189/271 (70%), Gaps = 6/271 (2%) Strand=Plus/Plus Query 118657 CCTCGAGCACGACGCCGACGCCGCGCGCGCCCG-TGACCTCGCTGATGCTCTCGGCGATC 118715 |||| | |||||| |||||||||| | ||| | | |||| |||| ||||| | Sbjct 760983 CCTCCATTACGACGGCGACGCCGCGGG-GCCGGATCGCCTCCATGATCGCGAGGGCGACC 761041 Query 118716 TGGCGCGTGAGCGCCTCCTGCACCTGGAAGCGGTCCGAGAGCATGTCGACGATGCGCGGG 118775 || ||||| |||||| ||||| | |||| || | | | ||| | || |||| | Sbjct 761042 TGCTTGGTGAGGCGCTCCTGGACCTGCAGGCGGCGAGAAAACGTCTCGGCAATACGCGCG 761101 Query 118776 ATCTTGCTCAGGCCGATGATCCTGCCCGC-GGGCAGGTAGCCCACGTGCGCCTTGCCGAT 118834 | |||||| || |||| || | || | ||| | |||||| | | |||||| | Sbjct 761102 AGCTTGCTGAGTCCGA-GAACGAGCTTGTTGGGGATGTAGCCGATGGAGATCTTGCCCGT 761160 Query 118835 AAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCAATGTCGCGCACGGTCACCAT 118894 ||||||| || ||||||||||||| ||| | | |||||||||||||||| | ||||| Sbjct 761161 GAAGGGCACCATGTGGTGCTCGCACAGCGAGTAGACGTCAATGTCGCGCACGATGACCAT 761220 Query 118895 CTCGCCCGACGT-CTCGGCAAAGAGGGCGTC 118924 |||| || || ||| ||||| | ||||| Sbjct 761221 CTCG-TCGTGGTCCTCCGCAAACACCGCGTC 761250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916244698007024