Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq12 131 1e-25 seq1 113 3e-20 seq7 89.7 3e-13 >seq12 Length=785499 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| ||| ||||||||| ||||| ||||| || || | || |||| Sbjct 767850 AGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCC 767791 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||||||||||||||| || |||||||| | || | ||||||||||| Sbjct 767790 TCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC 767731 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || || ||| || || | || |||||| Sbjct 767730 TGAATCTTGGCCTTGACGTTGTCGATAGTGTCGGAGGACTCAACTTCCAGAGTAATGGTC 767671 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| ||||| || || |||||||| Sbjct 767670 TTTCCGGTGAGAGTCTTGACGAAAATCTGCAT 767639 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||| | ||| ||||||||||||||| |||||||| || |||| | || Sbjct 768078 AGAACAAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGACAGCGTGCGGCCGTCC 768019 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || |||||||| || |||||||| | || | ||||||||||| Sbjct 768018 TCGAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 767959 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | |||||| |||| || || ||| Sbjct 767958 TGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGACGACTCGACCTCAAGCGTGATCGTC 767899 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||| ||||| || ||||||||||| Sbjct 767898 TTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 767867 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | ||| ||||||||| ||||| |||||||| || | || | || Sbjct 768306 AGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTACGACCGTCC 768247 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| |||||||| || || |||||||| | || | ||||||||||| Sbjct 768246 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 768187 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | || | |||||| || | || || ||| Sbjct 768186 TGAATCTTCGCCTTAACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGAGTAATCGTC 768127 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||||||||||||| || ||||||||||| Sbjct 768126 TTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 768095 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | || ||||||||||||||| |||||||| ||| | || | || Sbjct 767347 AGGACGAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTACGGCCGTCC 767288 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || ||||| || || || |||||||| | || | ||||||||||| Sbjct 767287 TCGAGCTGCTTGCCCGCGAAAATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 767228 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || || |||||| || | ||| |||||| Sbjct 767227 TGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTC 767168 Query 34946 TTTCCCGTGAGG 34957 || || || ||| Sbjct 767167 TTGCCGGTAAGG 767156 Score = 84.2 bits (92), Expect = 1e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | || ||||||||| ||||| |||||||| ||| | || | || Sbjct 767622 AGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCC 767563 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| |||||||| || || || |||||||| | || | ||||||||||| Sbjct 767562 TCGAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTC 767504 >seq1 Length=5410471 Score = 113 bits (124), Expect = 3e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | ||| ||||||||| ||||| |||||||| ||| |||| | || Sbjct 4378697 AGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 4378638 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||| || || |||||||| | || | ||||||||||| Sbjct 4378637 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 4378578 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||| || || | ||| || ||| Sbjct 4378577 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTC 4378518 Query 34946 TTTCCCGTGAGGGTCTTTAC 34965 || |||||||||||||| || Sbjct 4378517 TTGCCCGTGAGGGTCTTGAC 4378498 >seq7 Length=1006632 Score = 89.7 bits (98), Expect = 3e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 34802 TAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGG 34861 |||||||| ||| |||| | || || || ||||| ||||||||||| || || |||||| Sbjct 519797 TAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGG 519738 Query 34862 TCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTG 34921 || | || | ||||||||||| | || || |||||| | || | || Sbjct 519737 TCGGGGGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAA 519678 Query 34922 GCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | ||| || |||| ||| |||||||| || ||||||||||| || Sbjct 519677 GACTCCACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 519634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692736489904