Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq12 212 9e-49 seq3 158 2e-32 seq1 107 3e-17 seq5 98.7 1e-14 seq2 89.7 7e-12 seq9 86.0 9e-11 >seq12 Length=785499 Score = 212 bits (234), Expect = 9e-49 Identities = 205/258 (79%), Gaps = 4/258 (2%) Strand=Plus/Minus Query 1456518 AGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGG 1456577 || |||||||| |||||||||| |||| ||| | ||||| ||| |||| | || || | Sbjct 745560 AGAAGATCATCCGCGAGGCCGTCAAGATTGAGCAGGAGTTCCTCACCGAGGCTCTCCCCG 745501 Query 1456578 TGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGA 1456637 || | ||||||||||||||||||| | ||||||||||||||||||| | ||||||||||| Sbjct 745500 TGTCTCTCATCGGCATGAACGCCAAC-CTCATGTGCCAGTACATTG-AGTTTGTCGCCGA 745443 Query 1456638 CCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCAT 1456697 ||| ||||||| || |||||| | |||||| ||| | || ||||||| ||| | Sbjct 745442 CCGTCTGCTCGTCGCCCTCGGCAAC-GAGAAGATTTACAAGTCGACCAACCCCTTCGACT 745384 Query 1456698 GGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTGGC-GAGT 1456756 |||||| |||||||||| |||||||| ||||||| |||||| ||||||| | | || Sbjct 745383 TTATGGAGATGATCTCGCTGCAGGGCAAGGCCAACTTCTTCGAGTCCCGCGTGTCTGCGT 745324 Query 1456757 ACGCCAAGGCCGGCGTCA 1456774 |||||||| | || |||| Sbjct 745323 ACGCCAAGTCGGGTGTCA 745306 Score = 122 bits (134), Expect = 1e-21 Identities = 210/297 (71%), Gaps = 6/297 (2%) Strand=Plus/Minus Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACC-CGGT 1456073 || ||||| ||||| || |||||||| ||||| |||||||||||| || ||| || | Sbjct 745924 GAGAACATTCACTCGGAGACCTACTCTCTCCTTATCGACACCTACATCCGTGACAACGCT 745865 Query 1456074 CGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGA 1456133 || | ||||||| || ||||| || | || | | | ||| |||||||| Sbjct 745864 CGTCGTC-AGTACCTCTTCAAAGCTATCGAGACCATCCCCTGCATCAAGAAGAAGGCCGA 745806 Query 1456134 CTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGC 1456193 |||||| | |||||| | || || ||| | |||||| ||||| ||| | | | Sbjct 745805 CTGGGCTCTTCGTTGGATCTCGGACGACAGC-TCGTC-CTTTGCGGAGCGTCTCATTGCC 745748 Query 1456194 TTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAG 1456252 |||||||| || ||||| ||||| ||||| || || | ||||||| ||||||||| Sbjct 745747 TTTGCCGCCGTTGAGGGTATCTTCTTCTCTGGATCGTTTGCCTCCATCTTCTGGCTCAAG 745688 Query 1456253 AAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 ||||| ||||||||||| || | || ||| |||||| | ||| ||| ||||| Sbjct 745687 AAGCGTGGCCTCATGCCTGG-CCTCACCTTCTCCAACGAGCTCATCTCTCGTGACGA 745632 >seq3 Length=2410059 Score = 158 bits (174), Expect = 2e-32 Identities = 219/305 (72%), Gaps = 4/305 (1%) Strand=Plus/Plus Query 259883 ACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCC 259942 |||||| | |||||| ||| | |||||| || |||| || ||||| || || Sbjct 1853902 ACCTACAACCTCATGTCCGAGCGCTACTTCACCCACGCCTCGCCTACTCTCTTCAACGCT 1853961 Query 259943 GGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATC 260002 || || | || ||| |||| ||||| ||||| || | | ||||||| || || ||| Sbjct 1853962 GGTACCCAGCACCCCCAGATGTCGTCATGCTTCCTCGTCGCGATGAAGGATGACTCTATC 1854021 Query 260003 GAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATC 260062 || || ||||| ||||| |||||| ||||| | ||||||||| | |||||||| ||| Sbjct 1854022 GACGGTATCTACGACACTCTCAAGACCTGCGCTCAGATCTCCAAGACTGCCGGCGGTATC 1854081 Query 260063 GGTTTTGCCGCA--CACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCC 260120 ||| | || || ||||| | || ||| |||| | ||| | || ||||||||||| Sbjct 1854082 GGTCT--CCACATCCACAACATCCGTGCCAAGGGCTCGTACATTGCTGGCACCAACGGTT 1854139 Query 260121 AGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACC 260180 | |||||||| |||| |||||||| || | | ||| || || ||||||||||||| Sbjct 1854140 ACTCCAACGGTATTGTTCCCATGCTCCGTGCCTACGACGCGACTGCCCGCTACGTCGACC 1854199 Query 260181 AGTGC 260185 || || Sbjct 1854200 AGGGC 1854204 Score = 147 bits (162), Expect = 3e-29 Identities = 182/246 (74%), Gaps = 10/246 (4%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||||| | ||||||||||| ||||||||||| |||||| || | | ||| Sbjct 657593 TACTCGTCGTACATCTACAAGGTCCTCAAGCAGGTCCACCCCGACACTGGT-----ATC- 657646 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||||||||| | ||| | ||| | ||||||||||| |||||| | || ||||||| | Sbjct 657647 TCCAACAAGGCGATGGCCATCCTCAACTCGTTTGTGTCCGACATCTTTGAGCGCATCGCC 657706 Query 725019 ACCGAGGCCGGTCGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGA 725076 |||||||| ||| || ||| | |||| | ||| || ||| |||| |||| Sbjct 657707 ACCGAGGC--GTCCAAGCTCGCGTCGTACAACCACCGCTCGACCATCTCGTCGCGTGAGA 657764 Query 725077 TCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGG 725136 ||||||||||||| ||||| ||| | | ||| || || ||| ||||||| ||||||||| Sbjct 657765 TCCAGACCGCCGTCCGCCTCATCCTCCCCGGTGAGCTCTCCAAGCACGCCATCTCCGAGG 657824 Query 725137 GCACCA 725142 | |||| Sbjct 657825 GTACCA 657830 >seq1 Length=5410471 Score = 107 bits (118), Expect = 3e-17 Identities = 111/143 (78%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 1456608 ATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGA 1456667 |||||||||||||| || ||| ||||||||||||||| | |||||||||| | | | Sbjct 364869 ATGTGCCAGTACATGGAGTTT-GTCGCCGACCGCCTGACTGTCGCGCTCGGCTATG-ACA 364926 Query 1456668 AGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGA 1456727 || ||||| || ||||||| ||| ||||||||| | |||||||| | ||||| Sbjct 364927 AGATCTACCACGCGACCAACCCCTTCGACTGGATGGAGCTCATCTCGCTGCAAGGCAAAG 364986 Query 1456728 CCAACTTTTTCGAGCGCCGCGTG 1456750 |||||||||||||| |||||| Sbjct 364987 CCAACTTTTTCGAGTCGCGCGTG 365009 Score = 86.0 bits (94), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 165765 TGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCG 165824 ||||||||| | |||||||||||||||||| ||||||||||||||| | ||||| ||| Sbjct 1093886 TGGGGCGCCATTGGTGCGCGCACCACCGAGTCGCAGGTGCACCGCGAGCTTGCGTCCGCG 1093945 Query 165825 CTGCCGCTGCCCATTGGCTTCAAAAAC 165851 || | || | |||||||||| ||| Sbjct 1093946 CTCTCCATGACTGTTGGCTTCAAGAAC 1093972 >seq5 Length=1777877 Score = 98.7 bits (108), Expect = 1e-14 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 2133558 GACGAGATGGTGACGGTGCGCGATATTGACTTTTTCTCCATGTGCGAGCACCACCTGCTG 2133617 ||||||||||| | |||||||| |||||| | | ||| |||||||||||||| || || Sbjct 761226 GACGAGATGGTCATCGTGCGCGACATTGACGTCTACTCGCTGTGCGAGCACCACATGGTG 761167 Query 2133618 CCCTTTATCGGCAAGGCCCACGTGGGCTACCTGCCC-GCGGGCAAGATCATCGGTCTGAG 2133676 ||||| | |||||| | | | |||||| | ||| | || | || |||| || || Sbjct 761166 CCCTTCACGGGCAAGATCTCCATCGGCTACATCCCCAACAAGCTCGTTC-TCGGACTCAG 761108 Query 2133677 CAAGATCCCGCGCATCGTCGACATGTTTTCCGACCGCTTCCAAGTACAGGAGGCACTCAC 2133736 |||| || |||| || | ||| | |||||| |||| | || || |||||| ||||| Sbjct 761107 CAAGCTCGCGCGTATTGCCGAGACGTTTTCTCGCCGCCTGCAGGTCCAGGAGCGCCTCAC 761048 Query 2133737 GCGCCAGATCGCC 2133749 ||| ||||| Sbjct 761047 CAAGCAGGTCGCC 761035 >seq2 Length=4291162 Score = 89.7 bits (98), Expect = 7e-12 Identities = 124/172 (72%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 165750 GCAGACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGC 165809 || ||||| || |||||||||| | || ||||| ||||| ||| ||| ||||||| Sbjct 2190386 GCCGACCTCATCTCGTGGGGCGCAATTGGCGCGCGTACCACTGAGTCGCAGCTGCACCGT 2190445 Query 165810 GAGATGGCGTCGGCGCTGCCGC--TGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCG 165867 ||| | ||||| || |||| | | ||||| |||||||| ||| ||||||||||| || Sbjct 2190446 GAGCTCGCGTC--CGGTGCCTCGTTCCCCATCGGCTTCAAGAACGGCACCGACGGCGGCC 2190503 Query 165868 TGGCGACGGCCCTCGATGCCGTGCGCACTGCCGCCCAGCCACACACCTTTCT 165919 | | |||||||| ||| ||| | ||| ||| || ||| ||| || Sbjct 2190504 TCACTGTCGCCCTCGACGCCATGCAGTCCGCCAACCACCCCCACCACTTCCT 2190555 >seq9 Length=854214 Score = 86.0 bits (94), Expect = 9e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 724961 CAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCAC 725020 ||||||| | ||| |||| | |||||||| || |||||| | || || |||| || Sbjct 196308 CAACAAGGCGATGGCGATTCTCAACTCGTTCGTGTCCGACATCTTTGAGCGAATCGCGAC 196367 Query 725021 CGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCA 725080 |||||| || ||| | |||| | ||| || ||| | ||||||||||| Sbjct 196368 CGAGGCATCCAAGCTCGCGTCGTACAACCACCGCTCGACCATCTCGTCCCGCGAGATCCA 196427 Query 725081 GACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||||||| || || ||| | | ||| || || ||| ||||||| | ||||| ||||| Sbjct 196428 GACCGCCGTCCGTCTCATCCTTCCCGGAGAGCTCTCCAAGCACGCCATTTCCGAAGGCAC 196487 Query 725141 CA 725142 || Sbjct 196488 CA 196489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177809656770592