Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq12 134 1e-26 seq1 109 6e-19 >seq12 Length=785499 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | |||||||| || ||||| ||||| || |||||||||||| Sbjct 767865 CCACCGCGGAGACGAAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 767806 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || |||||||| || || || || |||| |||||||| ||||| || Sbjct 767805 AGAGTACGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGA 767746 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || ||||| || ||||| ||| | |||||||| || || || Sbjct 767745 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATAGTGTCGGAGGACTCAACT 767686 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||||||||| || ||||| | ||| || |||||||| ||||| Sbjct 767685 TCCAGAGTAATGGTCTTTCCGGTGAGAGTCTTGACGAAAATCTGCAT 767639 Score = 123 bits (136), Expect = 3e-23 Identities = 173/240 (72%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 134475 GCCGTTGCCTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATG 134534 |||||| || ||||| | || || | |||||||| || || || ||||| || ||| Sbjct 768333 GCCGTTTACTGGCCTCCACGCAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATG 768274 Query 134535 TTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTG 134593 |||||||| | || || | || ||| || ||||| || || || || || | |||||| Sbjct 768273 TTGTAGTCCGACAGCG-TACGACCGTCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTG 768215 Query 134594 CTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTC 134653 ||| || || || ||||| || || || ||||| || || || ||| | ||||| Sbjct 768214 CTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATGGTGTC 768155 Query 134654 GGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||| || || ||||||||||| || || || || | || |||||||| || ||||| Sbjct 768154 GGACGACTCGACCTCGAGAGTAATCGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 768095 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | |||||||| || || || ||||| |||||||||||||| | Sbjct 767362 CCACCACGGAGACGAAGGACGAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAA 767303 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| |||||||| ||||| || ||||| | ||||||||| ||||| || Sbjct 767302 AGGGTACGGCCGTCCTCGAGCTGCTTGCCCGCGAAAATGAGACGCTGCTGGTCGGGGGGG 767243 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| ||| | ||||| || || || || Sbjct 767242 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCGACC 767183 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 ||||| || ||||| || ||||| Sbjct 767182 TCGAGGGTGATGGTCTTGCCGGT 767160 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | |||||||| || || || ||||| || ||||||||||| | Sbjct 767637 CCACCGCGGAGGCGAAGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAA 767578 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| |||||||| ||||| || ||||| | ||||||||| ||||| || Sbjct 767577 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCGGGGGGA 767518 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || || || ||| | ||||| || || ||||| Sbjct 767517 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCAGAAGACTCCACC 767458 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 || ||||| ||||| || ||||| Sbjct 767457 TCAAGAGTGATGGTCTTGCCGGT 767435 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCCAACGGTGTGAGAGTCGTC 134563 || ||||| || || || ||||| ||||||||||||| || || | ||| | ||| || Sbjct 768075 ACAAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGACAGC-GTGCGGCCGTCCTC 768017 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 |||||| || || ||||| |||| |||||||| || || || ||||| || || || || Sbjct 768016 GAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTG 767957 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 || || ||||| ||| | ||||| ||||| || || || || || || || || Sbjct 767956 GATCTTCGCCTTGACGTTGTCGATGGTGTCCGACGACTCGACCTCAAGCGTGATCGTCTT 767897 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| | ||| || ||||| || ||||| Sbjct 767896 GCCGGTGAGAGTCTTGACGAAGATCTGCAT 767867 >seq1 Length=5410471 Score = 109 bits (120), Expect = 6e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || || || ||||| || ||||||||||| || |||| | ||| ||| Sbjct 4378694 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCG 4378635 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| || || || | |||||||| || || || ||||| || || || || Sbjct 4378634 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 4378575 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | ||||||||||| ||||| ||||| || || || || Sbjct 4378574 ATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTG 4378515 Query 134685 CCGGT 134689 || || Sbjct 4378514 CCCGT 4378510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398298920320