Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3 228 1e-54 seq1 95.1 2e-14 seq12 93.3 5e-14 seq5 89.7 6e-13 >seq3 Length=2410059 Score = 228 bits (252), Expect = 1e-54 Identities = 696/1062 (66%), Gaps = 38/1062 (4%) Strand=Plus/Minus Query 111044 ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGAC 111103 ||||| |||| || ||||| || ||||| | ||| | || | ||| ||||| || || Sbjct 1854881 ATAAACGCATCGGCCAGACCCTGGACACCAAGACCGACTGGGCGGTGACGCATGTTGGAG 1854822 Query 111104 TTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTG 111160 || || || |||| || || || | || | ||||| | || || || ||| Sbjct 1854821 TTGCGAGC---CTCAGGGACAGGGTAGTAGTTGCGCGTGATGACACAGTCAAGGTTCTTG 1854765 Query 111161 GTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCA--- 111217 || |||| ||| ||||| || || || || | |||| | ||| | ||| Sbjct 1854764 GTGACAACCTTGGTGATCTCGTGCAGCTTCTTGAAATCGTAGCTGCCGCCACCCTCAAAG 1854705 Query 111218 TTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCT 111277 |||||| | || || ||||| || || | ||||| || || ||| || | Sbjct 1854704 TTGACAAAGGCAGGGAGAGCGATGGAAGCAAGGTTGCAGACGGCGACCTCGTCGGGGGCA 1854645 Query 111278 GTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 111337 | |||||| | ||| || || || | ||||||| ||| || || || | | || ||| Sbjct 1854644 GAGTACTCGATAATCTCGGTGCAGAGGTTGGAAGACTTGATAGTGCCGAGGTGCTGCTGG 1854585 Query 111338 TTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 111397 || ||| |||| || |||||||| |||||| |||| || ||||| ||||| Sbjct 1854584 TTGGACTTGCGGTTGGCAGCGTCCTTGTAAAGCATGAAGGGACCACCAGTCTCGGTCTGA 1854525 Query 111398 GATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTTG--GCCCGTCCC 111454 | | || ||||| ||| | | || | | || | |||| ||| |||| | || Sbjct 1854524 GCCTCAAGGATAGCAAACCAGAGCTTCTGAGCCTTG----ATGGTCTTGCGGCCCTTGCC 1854469 Query 111455 TCCGC-CTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCG--CGTCGGAGAGA 111511 ||| |||||||||| |||||| || ||||||||||| | | | |||||| ||| Sbjct 1854468 CTCGCGCTCGTACTTTTCGTAGAGAGCCTCAAACTCCTC--CGAGTGGACGTCGGCAAGA 1854411 Query 111512 CCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATG 111571 || || || | | || || | |||| ||| | || | ||||||| ||||||||| Sbjct 1854410 CCGGGGCACTCGGCAGGGCACATGAGAGTCCACTCGCCGTCCGCCTCAACGCGCTTCATG 1854351 Query 111572 AAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCT 111631 || ||||| |||| ||| |||| | || || || | ||| |||| || | || Sbjct 1854350 AAGAGGTCGGGAACCCAGAGGGCGTAGAACAGGTCACGGGCACGAACCTCCTCCTTTCCG 1854291 Query 111632 TGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACT 111691 ||||| || | || ||||| || | || ||||| ||||| |||||||| |||| Sbjct 1854290 TGGTTCTTACGGAGGTCGAGGAAGTCGAAGACGTCCGCATGCCAAGGCTCAAGGTAGATG 1854231 Query 111692 GCGATAGATCC------CTT-TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTT 111744 || | | || ||| | ||||| || | || ||||| || || |||| Sbjct 1854230 GCAAAGGCACCGGGGCGCTTATTACCGCCC----TGGTCGACGTAGCGGGCAGTCGCGTC 1854175 Query 111745 AAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAA--TACGA 111802 | | || ||||| |||| |||||| | || | ||| || || || || ||||| Sbjct 1854174 GTAGGCACGGAGCATGGGAACAATACCGTTGGAGTAACCGTTGGTGCCAGCAATGTACGA 1854115 Query 111803 GATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATT 111862 | ||||| | | | |||||||| | || ||||| || || ||| ||||| Sbjct 1854114 G--CCCTTGGCACGGATGTTGTGGATGTGGAGACCGATACCGCCGGCAGTCTTGGAGATC 1854057 Query 111863 TGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATA 111922 || || || | | ||||| | |||||||||| ||| ||||| ||||| | |||| Sbjct 1854056 TGAGCGCAGGTCTTGAGAGTGTCGTAGATACCGTCGATAGAGTCATCCTTCATCGCGACG 1853997 Query 111923 AGGAAGCAACTGGACATCT-GCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGC 111981 |||||||| ||||||| | ||| ||| |||||||| |||||||| || || | || Sbjct 1853996 AGGAAGCATGACGACATCTGGGGGTGCTGG-GTACCAGCGTTGAAGAGAGTAGGCGAGGC 1853938 Query 111982 GTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTC 112041 ||| |||| | | |||||| || ||| ||||| | ||| ||||||| || Sbjct 1853937 GTGGGTGAAGTAGCGCTCGGACATGAGGTTGTAGGTCTCAATGACCTTTTCAATGTTGTC 1853878 Query 112042 CCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 |||||||| || || | || ||||||| ||||| ||| || Sbjct 1853877 GCCGTGGATACCAATAGAAACACGCATGATCATGTGCTGGGG 1853836 >seq1 Length=5410471 Score = 95.1 bits (104), Expect = 2e-14 Identities = 190/276 (69%), Gaps = 12/276 (4%) Strand=Plus/Minus Query 122529 GTTCATACCGATGAGGTTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAAC 122588 ||| || ||||||||| |||||| || ||||| || |||| | ||||| ||||| || Sbjct 364801 GTTGATGCCGATGAGGGCACATGGCAGGGCGTCGGTGAGGAACTCCTTCTCGATCTCCAC 364742 Query 122589 CGCCTCTTTCACGATGGCGTGGA--TAGT-TTCGGTAGTG-GGTCTATTACG--CAAAGT 122642 ||| || ||| || ||||| | | | ||| ||| | ||| | | | | || Sbjct 364741 CGCTTCCGACACAATCGCGTGTACTTCCTCTTCAGTACTTCGGTGCTTCAGGTGCGAATA 364682 Query 122643 CTTGAAGAGCTCCACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATT 122702 | | ||| | ||||| || |||||| ||||| || ||||| || || || || Sbjct 364681 CA-GCAGACAT-----GCAAAGTCGGTGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTT 364628 Query 122703 TGAGAAGCATAGACCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGA 122762 |||||| || || |||| || || ||||| || | ||| | || ||| || || Sbjct 364627 GGAGAAGGTCAGGCCGCGCATAAGCCCGCGCTTTTTGAGCCAGAAGATGGCGGCAAACGA 364568 Query 122763 CCCGGAGAAGAAGATACCCTCCACACACGCAAACGC 122798 ||| ||||||||||| ||||| || ||||||||||| Sbjct 364567 CCCCGAGAAGAAGATGCCCTCGACGCACGCAAACGC 364532 >seq12 Length=785499 Score = 93.3 bits (102), Expect = 5e-14 Identities = 121/166 (73%), Gaps = 1/166 (1%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || |||||||||||| || || || || || || || |||||| || || Sbjct 745611 GCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGGCCA 745670 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 |||||||| || |||||||| | ||| | || | | || || || |||||||||||| Sbjct 745671 GGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAACGATCCAGAGAAGAAGATA 745730 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG 122824 ||||| || ||||| |||| || || || || ||||| |||| Sbjct 745731 CCCTCAACGGCGGCAAAGGCAATGAGACGCTCCGCAAAGGA-CGAG 745775 >seq5 Length=1777877 Score = 89.7 bits (98), Expect = 6e-13 Identities = 219/330 (66%), Gaps = 4/330 (1%) Strand=Plus/Plus Query 11620 CTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGAT 11679 ||| || | |||||| |||||||| | ||||| ||||| || || | | ||| | Sbjct 677248 CTTACCGATCGCATCGATCTCATCCACGAAGATGATACAGGGGGCGTTCTTCCTCGCGGT 677307 Query 11680 TTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGC 11739 | ||||| || || || | | ||| ||||| || |||||||| || || | || Sbjct 677308 GGCGAAGAGGTCACGCACACGGGACGGACCGACACCGACGAACATCTCGACGAACTCTGA 677367 Query 11740 GGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGT 11799 | || | | ||| || || || | ||||| ||| | || |||||||||||| Sbjct 677368 ACCCGAAACCGACAGGAAGGGCACCTTGGCCTCACCGGCGGTTGCCTTGGCGAGGAGGGT 677427 Query 11800 CTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC--ACTT 11857 ||| || ||||| || ||| | ||| | |||||| ||||| ||||||||||| ||| Sbjct 677428 CTTACCGGTACCGGGGGGACCGGAGAGGATGGCGCCGCGGGGAATCTTGGCACCGAGCTT 677487 Query 11858 CCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCC 11917 | || | | || | ||| || || | |||| ||| || ||| || |||||| Sbjct 677488 C--TCGTACTTGGCTGGCTCCTTCAGGAACTTGACAAACTCCATAATTTCCTCCTTGGCC 677545 Query 11918 GCGTCAATCCCCTCAACATCACTGAAGCGG 11947 |||| || || | || || | ||| ||| Sbjct 677546 TCGTCCATACCAGCGACGTCGCGGAAACGG 677575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031874393600