Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3 300 2e-76 seq12 152 6e-32 seq1 118 1e-21 >seq3 Length=2410059 Score = 300 bits (332), Expect = 2e-76 Identities = 706/1057 (67%), Gaps = 28/1057 (3%) Strand=Plus/Minus Query 118518 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 118577 ||||| |||| || ||||| |||||||| || || | |||||| || | ||| || || Sbjct 1854881 ATAAACGCATCGGCCAGACCCTGGACACCAAGACCGACTGGGCGGTGACGCATGTTGGAG 1854822 Query 118578 TTCCGAGCGGTCTCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTG 118634 || ||||| ||| || || || | || | ||| || | | || || ||| Sbjct 1854821 TTGCGAGC---CTCAGGGACAGGGTAGTAGTTGCGCGTGATGACACAGTCAAGGTTCTTG 1854765 Query 118635 GTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA--- 118691 ||||||||||| ||||| || || ||||| | | |||| | |||| | ||| Sbjct 1854764 GTGACAACCTTGGTGATCTCGTGCAGCTTCTTGAAATCGTAGCTGCCGCCACCCTCAAAG 1854705 Query 118692 TTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 118751 |||||| | ||| || ||||| || || || || || || | | ||| || || Sbjct 1854704 TTGACAAAGGCAGGGAGAGCGATGGAAGCAAGGTTGCAGACGGCGACCTCGTCGGGGGCA 1854645 Query 118752 GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 118811 | |||||| ||||| || ||||| | ||| ||| ||| || ||||| | || || || Sbjct 1854644 GAGTACTCGATAATCTCGGTGCAGAGGTTGGAAGACTTGATAGTGCCGAGGTGCTGCTGG 1854585 Query 118812 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 118871 || ||||| ||| || ||||||||||||||| | || || ||||| || || Sbjct 1854584 TTGGACTTGCGGTTGGCAGCGTCCTTGTAAAGCATGAAGGGACCACCAGTCTCGGTCTGA 1854525 Query 118872 GACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGC---CC 118927 | || || ||||| ||||| | || | || | ||| ||| | | || Sbjct 1854524 GCCTCAAGGATAGCAAACCAGAGCTTCTGAGCCTTGA----TGGTCTTGCGGCCCTTGCC 1854469 Query 118928 CTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCC 118987 ||| |||||||||| |||||| || |||||||| || | | || | || || Sbjct 1854468 CTCGCGCTCGTACTTTTCGTAGAGAGCCTCAAACTCCTCCGAGTGGACGTCGGCAAGACC 1854409 Query 118988 TGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAA 119047 || || | ||||| | ||||| ||| | || || ||||||| ||||||||||| Sbjct 1854408 GGGGCACTCGGCAGGGCACATGAGAGTCCACTCGCCGTCCGCCTCAACGCGCTTCATGAA 1854349 Query 119048 GAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTG 119107 |||||| || | |||||| || |||| || || || ||| | || || | || || Sbjct 1854348 GAGGTCGGGAACCCAGAGGGCGTAGAACAGGTCACGGGCACGAACCTCCTCCTTTCCGTG 1854289 Query 119108 ATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGC 119167 || ||| | || | ||||| | || ||||| ||||| || || ||||| | || Sbjct 1854288 GTTCTTACGGAGGTCGAGGAAGTCGAAGACGTCCGCATGCCAAGGCTCAAGGTAGATGGC 1854229 Query 119168 GATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATAC 119224 | | || || | ||| |||||| || || | ||||| |||| | | Sbjct 1854228 AAAGGCACCGGGGCGCTTATTACCGCCCTGGTCGACGTAGCGGGCAGTCGCGTCGTAGGC 1854169 Query 119225 ACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTA 119282 ||| ||||| |||| ||||| | ||| | || || || || ||| ||||| | | Sbjct 1854168 ACGGAGCATGGGAACAATACCGTTGGAGTAACCGTTGGTGCCAGCAATGTACGAGCCCT- 1854110 Query 119283 TTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCG 119342 |||| | || | ||||||||| | ||| ||||| || || ||| ||||| || ||| Sbjct 1854109 -TGGCACGGATGTTGTGGATGTGGAGACCGATACCGCCGGCAGTCTTGGAGATCTGAGCG 1854051 Query 119343 CACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAG 119402 || | ||||| || ||||||| || ||||| |||||| |||| | |||| ||||||| Sbjct 1854050 CAGGTCTTGAGAGTGTCGTAGATACCGTCGATAGAGTCATCCTTCATCGCGACGAGGAAG 1853991 Query 119403 CAGCTCGACATTTGAGGC--CTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGA 119460 || |||||| || || |||||| |||||||||||||||||| || | |||||| Sbjct 1853990 CATGACGACATCTGGGGGTGCTGGGT--ACCAGCGTTGAAGAGAGTAGGCGAGGCGTGGG 1853933 Query 119461 TGAACATACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGT 119520 |||| | | |||||| || ||||||||| | ||| ||||| || |||| Sbjct 1853932 TGAAGTAGCGCTCGGACATGAGGTTGTAGGTCTCAATGACCTTTTCAATGTTGTCGCCGT 1853873 Query 119521 GAATACCGATCGAGACCCGCATAAACATGTATTGGGG 119557 | ||||| || || || ||||| | ||||| ||||| Sbjct 1853872 GGATACCAATAGAAACACGCATGATCATGTGCTGGGG 1853836 >seq12 Length=785499 Score = 152 bits (168), Expect = 6e-32 Identities = 352/521 (68%), Gaps = 16/521 (3%) Strand=Plus/Plus Query 129745 CTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAATGGGTTCTT 129804 |||||||||||| | ||| || | || ||| |||||||||| || || ||||| | Sbjct 745340 CTCGAAGAAGTTGGCCTTGCCCTGCAGCGAGATCATCTCCATAAAGTCGAAGGGGTTGGT 745399 Query 129805 TGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACGATCCGAGACGTACTCAA 129863 || || |||| | || | | | | ||| ||||| || | ||| |||||| Sbjct 745400 CGACTTGTAAATCTTCTCGTTGCCGAGGGCGAC-GAGCAGACGGTCGGCGACAAACTCAA 745458 Query 129864 TGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACATGGG-AGCGCGTCCAAG 129922 |||||| |||| | || |||||| |||||||| ||| ||| || || || | Sbjct 745459 TGTACTGGCACATGAGGTTGGCGTTCATGCCGATGAGAG-ACACGGGGAGAGCCTCGGTG 745517 Query 129923 ATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGAATGGTCTCCGTGCCA 129982 | |||| ||| |||||| | || || || || | ||| | |||| || | | Sbjct 745518 AGGAACTCCTGCTCAATCTTGACGGCCTCGCGGATGATCTTCTCAATGAGGTCGGGGTGG 745577 Query 129983 GGTCTATTGCGCAAAGTCT-TGAAGAGTTCCACGGCAAACTCCTGGTGGAGACCCTCGTC 130041 || | | || | || ||||||| ||||| || ||||||||||||||| Sbjct 745578 GGGCGAC-GCTTCAGGTGGGTGAAGAGGAGACAAGCAAAGTCGGTGTGGAGACCCTCGTC 745636 Query 130042 ACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCA 130101 ||| |||||||| || || |||||| || || |||||||| || |||||||| | ||| Sbjct 745637 ACGAGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATGAGGCCACGCTTCTTGAGCCA 745696 Query 130102 GAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAAGAG 130161 ||| || | ||| || |||||||||||||| ||||| || || || |||| ||| Sbjct 745697 GAAGATGGAGGCAAACGATCCAGAGAAGAAGATACCCTCAACGGCGGCAAAGGCAATGAG 745756 Query 130162 ACGCTCAGCAAAGGAGCGGGACTTTGT-----ATCAAACCACTTCATCGCCCACTGCGCC 130216 |||||| |||||||| || | | || ||| ||| | | ||||| | ||| Sbjct 745757 ACGCTCCGCAAAGGA-CGAGCTGTCGTCCGAGATCCAACGA----AGAGCCCAGTCGGCC 745811 Query 130217 TTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 130257 || |||| ||| || |||| ||||| ||| |||| ||||| Sbjct 745812 TTCTTCTTGATGCAGGGGATGGTCTCGATAGCTTTGAAGAG 745852 >seq1 Length=5410471 Score = 118 bits (130), Expect = 1e-21 Identities = 196/279 (70%), Gaps = 12/279 (4%) Strand=Plus/Minus Query 129883 GGAGTTCATACCGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTC 129942 || ||| || ||||||||| |||||| || ||||| || |||| ||||||| || || Sbjct 364804 GGCGTTGATGCCGATGAGGGCACATGGCAGGGCGTCGGTGAGGAACTCCTTCTCGATCTC 364745 Query 129943 CACAGCTTCCCGCACGATGGCGTGAA--TGGTCTCC-GTGCCAGGTCTATT---GCGCAA 129996 ||| |||||| ||| || ||||| | | ||| | || | | || | || | Sbjct 364744 CACCGCTTCCGACACAATCGCGTGTACTTCCTCTTCAGTACTTCGGTGCTTCAGGTGCGA 364685 Query 129997 AGTCTTGAAGAGTTCCACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTC 130056 | | | ||| | ||||| || |||||| |||||||| ||||||||||| || Sbjct 364684 ATACA-GCAGACAT-----GCAAAGTCGGTGTGGAGGCCCTCGTCGCGGGAGATGAGCTC 364631 Query 130057 ATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAA 130116 || |||||| ||| || |||| || || ||||| || | |||||| || || ||| Sbjct 364630 GTTGGAGAAGGTCAGGCCGCGCATAAGCCCGCGCTTTTTGAGCCAGAAGATGGCGGCAAA 364571 Query 130117 TGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGC 130155 || || ||||||||||| ||||| || ||||| ||||| Sbjct 364570 CGACCCCGAGAAGAAGATGCCCTCGACGCACGCAAACGC 364532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618435076312960