Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3 235 6e-57 seq12 150 2e-31 seq1 113 5e-20 >seq3 Length=2410059 Score = 235 bits (260), Expect = 6e-57 Identities = 694/1057 (66%), Gaps = 42/1057 (4%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| || | || ||||| || || || ||||||| ||| Sbjct 1853836 CCCCAGCACATGATCATGCGTGTTTCTATTGGTATCCACGGCGACAACATTGAAAAGGTC 1853895 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | ||||| ||| || |||||| | | |||| ||||| | || || |||||| Sbjct 1853896 ATTGAGACCTACAACCTCATGTCCGAGCGCTACTTCACCCACGCCTCGCCTACTCTCTTC 1853955 Query 104342 AATGCTGGTACACCAAGACCCCAA-ATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 || |||||||| ||| ||||| | ||||| |||||||| |||| | ||||| || Sbjct 1853956 AACGCTGGTAC-CCAGCACCCCCAGATGTCGTCATGCTTCCTCGTCGCGATGAAGGATGA 1854014 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| ||| |||||||||| | ||||| | | || || || ||||| ||| || || Sbjct 1854015 CTCTATCGACGGTATCTACGACACTCTCAAGACCTGCGCTCAGATCTCCAAGACTGCCGG 1854074 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA--TTCGGGGGACA 104518 ||||| || | |||||||| | | | ||||| |||||| || || || Sbjct 1854075 CGGTATCGGTCTCCACATCCACAACATCCGTGCCAAGGG--CTCGTACATTGCTGGCACC 1854132 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 || ||| | || | |||||| |||| ||||| || | | |||| || || ||||| Sbjct 1854133 AACGGTTACTCCAACGGTATTGTTCCCATGCTCCGTGCCTACGACGCGACTGCCCGCTAC 1854192 Query 104579 GTAAATCAAGCTGGGCGTCGA-AAG------GGATCTATCGCAGTCTATCTTGAGCCATG 104631 || | || ||||| | ||| || | | || |||| |||||||| || Sbjct 1854193 GTCGACCA----GGGCGGTAATAAGCGCCCCGGTGCCTTTGCCATCTACCTTGAGCCTTG 1854248 Query 104632 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCG 104691 ||| ||||| || | || ||||| || | ||| ||||| || | ||||||| || Sbjct 1854249 GCATGCGGACGTCTTCGACTTCCTCGACCTCCGTAAGAACCACGGAAAGGAGGAGGTTCG 1854308 Query 104692 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751 ||| || || |||| ||| |||||| |||| || |||||||||||| | ||||||| Sbjct 1854309 TGCCCGTGACCTGTTCTACGCCCTCTGGGTTCCCGACCTCTTCATGAAGCGCGTTGAGGC 1854368 Query 104752 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGG 104811 | ||| | ||| ||||| | || || | | || || ||||| |||| | | Sbjct 1854369 GGACGGCGAGTGGACTCTCATGTGCCCTGCCGAGTGCCCCGGTCTTGCCGACGTCCACTC 1854428 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGG-TCGGGCGACTGCGACGG 104870 ||||||||||| || || ||| |||||||||| || || |||| | ||| Sbjct 1854429 GGAGGAGTTTGAGGCTCTCTACGAAAAGTACGAGCGCGAGGGCAAGGGCCGC-AAGACCA 1854487 Query 104871 TGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929 | | || | || | | ||| ||||| || || |||| |||||||||||| || Sbjct 1854488 T-CAAGGCTCAGAAGCTCTGGTTTGCTATCCTTGAGGCTCAGACCGAGACTGGTGGTCCC 1854546 Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 104989 | |||||||||||| ||||| |||| ||| || || || | | || ||| Sbjct 1854547 TTCATGCTTTACAAGGACGCTGCCAACCGCAAGTCCAACCAGCAGCACCTCGGCACTATC 1854606 Query 104990 AAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 105049 ||| |||||| ||||| || || || | || | | | | || ||| || || Sbjct 1854607 AAGTCTTCCAACCTCTGCACCGAGATTATCGAGTACTCTGCCCCCGACGAGGTCGCCGTC 1854666 Query 105050 TGTAACCTCGCATCAATCGCTCTCCC---------CAAGTATGTGGATCCAGAGACAAAG 105100 || ||||| || || ||||||||||| ||| | || || | | | || Sbjct 1854667 TGCAACCTTGCTTCCATCGCTCTCCCTGCCTTTGTCAACTTTGAGGGT--GGCGGCAGCT 1854724 Query 105101 ACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGA 105160 || |||| | || || ||||| | || || ||||||||| ||||| || | Sbjct 1854725 AC----GATTTCAAGAAGCTGCACGAGATCACCAAGGTTGTCACCAAGAACCTTGACTGT 1854780 Query 105161 GTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACAC 105217 || || | || | ||||| || |||| ||||| || || || ||| | ||| Sbjct 1854781 GTCATCACGCGCAACTACTACCCTGTCCCTGAG---GCTCGCAACTCCAACATGCGTCAC 1854837 Query 105218 CGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATG 105254 || ||| | ||||| ||||| |||||||| || |||| Sbjct 1854838 CGCCCAGTCGGTCTTGGTGTCCAGGGTCTGGCCGATG 1854874 >seq12 Length=785499 Score = 150 bits (166), Expect = 2e-31 Identities = 130/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 |||||||| ||||| ||| | || ||||| ||||||||||||||||||||||| || Sbjct 745771 TCCTTTGCGGAGCGTCTCATTGCCTTTGCCGCCGTTGAGGGTATCTTCTTCTCTGGATCG 745712 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 || | | || | |||||||||||||| || |||||||| || ||| |||||||||| Sbjct 745711 TTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTCACCTTCTCCAAC 745652 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||| ||||||||||||||||| |||||| || ||||| Sbjct 745651 GAGCTCATCTCTCGTGACGAGGGTCTCCACACCGACTTTGC 745611 >seq1 Length=5410471 Score = 113 bits (124), Expect = 5e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 94814 TCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGC 94873 |||| |||||||| || ||||| ||||||||||| || || || ||| || | |||| Sbjct 364530 TCGCGTTTGCGTGCGTCGAGGGCATCTTCTTCTCGGGGTCGTTTGCCGCCATCTTCTGGC 364589 Query 94874 TCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACG 94933 |||| ||||| || || |||| || || ||||||||||||||| ||||| || |||| Sbjct 364590 TCAAAAAGCGCGGGCTTATGCGCGGCCTGACCTTCTCCAACGAGCTCATCTCCCGCGACG 364649 Query 94934 AGGGACTCCACCAAGAGTTTGC 94955 |||| |||||| || ||||| Sbjct 364650 AGGGCCTCCACACCGACTTTGC 364671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260683347840