Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq12 147 7e-30 seq1 84.2 7e-11 >seq12 Length=785499 Score = 147 bits (162), Expect = 7e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | || || || |||||||| ||||| || || || || || || Sbjct 767869 CATACCACCGCGGAGACGAAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTC 767810 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| || || || ||||| || ||||| || || ||||| || || Sbjct 767809 GGACAGAGTACGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGG 767750 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || |||||||| || || || || || || || | || || | || Sbjct 767749 AGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATAGTGTCGGAGGACTC 767690 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||||| || |||| ||||||||||| || || || || ||||||||||| Sbjct 767689 AACTTCCAGAGTAATGGTCTTTCCGGTGAGAGTCTTGACGAAAATCTGCAT 767639 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | |||||||| || || || ||||| || ||||| || || || Sbjct 768097 CATACCACCGCGCAGACGGAGAACAAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTC 768038 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || || ||||||||||| || || ||||| ||||| Sbjct 768037 CGACAGCGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCAGG 767978 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || ||||| || || || || || || || || | || || | || Sbjct 767977 AGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGACGACTC 767918 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| ||||| || || || || || |||||||| Sbjct 767917 GACCTCAAGCGTGATCGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 767867 Score = 122 bits (134), Expect = 3e-22 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||||| || ||||| | | || || || || || || ||||| || || || || | Sbjct 768329 TTTACTGGCCTCCACGCAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGT 768270 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || || || ||||| || |||||||| ||||| ||||| ||||| | Sbjct 768269 AGTCCGACAGCGTACGACCGTCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGT 768210 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||||||||| || || || |||||||| || || || || || || || | || || | Sbjct 768209 CAGGAGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATGGTGTCGGACG 768150 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || |||| ||||| || || || || || || || |||||||| Sbjct 768149 ACTCGACCTCGAGAGTAATCGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 768095 Score = 104 bits (114), Expect = 7e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | || || || || ||||||||||| || || || || || || Sbjct 767641 CATACCACCGCGGAGGCGAAGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTC 767582 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || || || || || || ||||| ||||| || || Sbjct 767581 CGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCGGG 767522 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || ||||| || || || || ||||| || || | ||||| | || Sbjct 767521 GGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCAGAAGACTC 767462 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 || ||||| || | ||||| ||||| || Sbjct 767461 CACCTCAAGAGTGATGGTCTTGCCGGTAAG 767432 Score = 100 bits (110), Expect = 9e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || ||||||||||| || ||||| || || || Sbjct 767366 CATACCACCACGGAGACGAAGGACGAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTC 767307 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || || || || || || ||||| ||||| || || Sbjct 767306 CGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCCGCGAAAATGAGACGCTGCTGGTCGGG 767247 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || || || || || ||||| | || || | || Sbjct 767246 GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTC 767187 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 || || || || | ||||| ||||| || Sbjct 767186 GACCTCGAGGGTGATGGTCTTGCCGGTAAG 767157 >seq1 Length=5410471 Score = 84.2 bits (92), Expect = 7e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || || ||||| || || || || || || Sbjct 4378716 CATACCACCACGCAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTC 4378657 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || || || || ||||| || || ||||| ||||| Sbjct 4378656 CGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGG 4378597 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || || || || || || || | || || | || Sbjct 4378596 GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTC 4378537 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || || || | ||||| || || || || || || Sbjct 4378536 CACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGAC 4378498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515254089372848