Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3 291 9e-74 >seq3 Length=2410059 Score = 291 bits (322), Expect = 9e-74 Identities = 408/567 (72%), Gaps = 4/567 (1%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTAC 53251 ||||||| || | | ||||||||||| ||| || | | | ||| |||||| ||| Sbjct 1853849 TCATGCGTGTTTCTATTGGTATCCACGGCGACAACATTGAAAAG-GTCATTGAGACCTAC 1853907 Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 || | ||| | | ||||| || |||||| |||| || || |||||||||||||| Sbjct 1853908 AACCTCATGTCCGAGCGCTACTTCACCCACGCCTCGCCTACTCTCTTCAACGCTGGTACC 1853967 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 | ||||| ||||||||| |||||||| || ||||||||||||||||| |||||||| Sbjct 1853968 CAGCACCCCCAGATGTCGTCATGCTTCCTCGTCGCGATGAAGGATGACTCTATCGACGGT 1854027 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 |||||||| || |||||| || || || ||||||||| | || ||||||||| || Sbjct 1854028 ATCTACGACACTCTCAAGACCTGCGCTCAGATCTCCAAGACTGCCGGCGGTATCGGTCTC 1854087 Query 53432 CACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGAT 53491 ||| | ||| ||||||| || ||| | || || || ||||| | || | Sbjct 1854088 CACATCCACAACATCCGTGCCAAGGGCTCGTACATTGCTGGCACCAACGGTTACTCCAAC 1854147 Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551 || || || || |||||||| | || | || || ||||| |||||| ||||||| ||| Sbjct 1854148 GGTATTGTTCCCATGCTCCGTGCCTACGACGCGACTGCCCGCTACGTCGACCAGGGCGGT 1854207 Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611 |||||| || | || ||||||||||| ||||| ||||| || ||| | | || Sbjct 1854208 AATAAGCGCCCCGGTGCCTTTGCCATCTACCTTGAGCCTTGGCATGCGGACGTCTTCGAC 1854267 Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TAC 53670 || ||||| || ||| ||| || || | || ||| | || |||||||||||| ||| Sbjct 1854268 TTCCTCGACCTCCGTAAGAACCACGGAAAGGAGGAGGTTCGTGCCCGTGACCTGTTCTAC 1854327 Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730 || || ||| |||| |||||||||||| | || ||| ||||| |||||| || Sbjct 1854328 -GCCCTCTGGGTTCCCGACCTCTTCATGAAGCGCGTTGAGGCGGACGGCGAGTGGACTCT 1854386 Query 53731 GATGTGCCCGAACGAGTGCCCCGGCCT 53757 |||||||| |||||||||||| || Sbjct 1854387 CATGTGCCCTGCCGAGTGCCCCGGTCT 1854413 Score = 116 bits (128), Expect = 4e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 ||||| |||||| ||| || ||||||||| | |||||| | | |||||| | || Sbjct 1855370 TCAAGTCTATTTACAAGACTGTCTGGGAGATTTCGCAGAAGTCTGTCATTGACCTTGCTG 1855429 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847 | || |||||||| | |||||||||||| ||||| ||||||| | || || || | Sbjct 1855430 CCGACCGTGGTGCCTTCATCGACCAGTCTCAGTCGTTGAACATTCACCTGTCCAACCCCT 1855489 Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907 | | || || | | || |||||||| ||||| |||||| || |||||||| |||| Sbjct 1855490 CGTTCTCCCAGCTTACTTCCATGCACTTCTACGGCTGGAAGCGCGGTCTCAAGACCGGTA 1855549 Query 55908 TGTACTATCTGCGGACCCG 55926 | ||||| || || ||||| Sbjct 1855550 TCTACTACCTTCGTACCCG 1855568 Score = 100 bits (110), Expect = 3e-16 Identities = 208/303 (69%), Gaps = 5/303 (2%) Strand=Plus/Minus Query 117300 GGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGA 117359 |||| ||| |||| ||||||| ||| || || || || ||||| ||| ||||||| Sbjct 2221066 GGCG-GTGGAAATATAACGAGCGCTAGCTGCGTCTTTACCACCCTGGTTACGGGTACCGA 2221008 Query 117360 ATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGT 117419 | || || || |||| | |||||| | ||||||| ||||||||| | ||||| | | Sbjct 2221007 ACTGACCCCTTGGCTGGAGGAGGTTGATGTTGTTGCTACCCACAAAGCTCTGAGCAAGGC 2220948 Query 117420 TGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCAC-G 117478 ||||| || || || || | ||||| || || || || ||| | || ||| | Sbjct 2220947 CAACAATTGTCATCTGAAGACTAACGTCACCGTGATGGTAAGCGGTCA-CGCCACCAATG 2220889 Query 117479 TAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAA 117538 || || |||| |||||| || | || | | | | ||| | |||| | | | || Sbjct 2220888 TACGATGCAAGCTCAGCCACTTTGACTTCGGTCTTGATATTCCTTTTGATGGAACCGTAG 2220829 Query 117539 ATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGG-ATCGAACGCTTGAT 117597 || ||||||||||| | ||||| || || || || ||| ||||| || || ||| || | Sbjct 2220828 ATGACCTTGCGCTGGCCGGGCTTGAGGCCGTCGGCGACG-GAGGGAATGGATCGCATGTT 2220770 Query 117598 GTC 117600 ||| Sbjct 2220769 GTC 2220767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215890556800