Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3 264 1e-65 seq12 188 8e-43 seq1 140 4e-28 seq7 125 8e-24 >seq3 Length=2410059 Score = 264 bits (292), Expect = 1e-65 Identities = 750/1149 (65%), Gaps = 14/1149 (1%) Strand=Plus/Minus Query 80614 GCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTC 80673 |||| ||||||||| | ||||| ||||| || ||| ||| |||| ||| Sbjct 1854983 GCCATCTCACACGAGGACTCGAGGGCAGCGTGGTAGATGGTCTCGAAGATCTGGAGGTTG 1854924 Query 80674 ACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGG 80733 | | || |||| || |||||| | || || | ||| ||| | || ||||| Sbjct 1854923 AGCCGACGAGCCTCAGGCGAGTCGAAGGGCATGCGGAGAGCCATAAACGCATCGGCCAGA 1854864 Query 80734 CCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA-TCGCTCGGCCTCCGGAAT 80792 ||||| || || | ||| |||||||| ||| |||| || | || | |||| || | Sbjct 1854863 CCCTGGACACCAAGACCGACTGGGCGGTGACGCATGTTGGAGTTGCGAG-CCTCAGGGAC 1854805 Query 80793 TGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATC 80852 ||||| |||| |||||| | || ||||| || |||||| || | || Sbjct 1854804 AGGGTAGTAGTTGCGCGTGATGACACAGTCAAGGTTCTTGGTGACAACCTTGGTGATCTC 1854745 Query 80853 ATGAAGTTTCTGAAAGTCGAAT-TGGTTCCCC--------TTCACAAATGCCGGAAGGCT 80903 || || |||| || ||| | || || | || ||||| || || || Sbjct 1854744 GTGCAGCTTCTTGAAATCGTAGCTGCCGCCACCCTCAAAGTTGACAAAGGCAGGGAGAGC 1854685 Query 80904 CAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGT 80963 | ||| || || ||||| ||||| ||||| || | | | |||||| || || || Sbjct 1854684 GATGGAAGCAAGGTTGCAGACGGCGACCTCGTCGGGGGCAGAGTACTCGATAATCTCGGT 1854625 Query 80964 GCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGC 81023 ||| | || |||||||| || || || |||| | |||||| |||||| |||| ||| Sbjct 1854624 GCAGAGGTTGGAAGACTTGATAGTGCCGAGGTGCTGCTGGTTGGACTTGCGGTTGGCAGC 1854565 Query 81024 GTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCA 81083 ||||||||| |||| | || ||| |||||| ||| | || ||||| || ||| Sbjct 1854564 GTCCTTGTAAAGCATGAAGGGACCACCAGTCTCGGTCTGAGCCTCAAGGATAGCAAACCA 1854505 Query 81084 AATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGC 81143 | || | ||||||| ||||||| ||||| ||| | | ||||| |||| Sbjct 1854504 GAGCTTCTGAGCCTTGATGGTCTTGCGGCCCTTGCCCTCGCGCTCGTACTTTTCGTAGAG 1854445 Query 81144 TTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAG 81203 | || |||| | ||| | || | || | ||||||||| ||||||||| || Sbjct 1854444 AGCCTCAAACTCCTCCGAGTGGACGTCGGCAAGACCGGGGCACTCGGCAGGGCACATGAG 1854385 Query 81204 GTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGT 81263 ||| ||| ||| ||| || ||||||||| ||| || | |||||||||| Sbjct 1854384 AGTCCACTCGCCGTCCGCCTCAACGCGCTTCATGAAGAGGTCGGGAACCCAGAGGGCGTA 1854325 Query 81264 GAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTC 81323 ||||||||| ||| || ||||||| | || ||||| || | ||||| ||||| Sbjct 1854324 GAACAGGTCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTACGGAGGTCGAGGAAGTC 1854265 Query 81324 CATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCC 81380 | || |||||||||||| ||||| || || | ||| | | || ||| | || Sbjct 1854264 GAAGACGTCCGCATGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGGCGCTTATTACC 1854205 Query 81381 ACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATC 81440 ||||||| |||||| ||||||||||||| | |||| | ||| || | ||||| | Sbjct 1854204 GCCCTGGTCGACGTAGCGGGCAGTCGCGTCGTAGGCACGGAGCATGGGAACAATACCGTT 1854145 Query 81441 TGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAG 81500 || | |||||| || || | || ||| |||||||| || | ||| ||| || Sbjct 1854144 GGAGTAACCGTTGGTGCCAGCAATGTACGAGCCCTTGGCACGGATGTTGTGGATGTGGAG 1854085 Query 81501 ACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCC 81560 |||||| || || | ||| || |||||||| || || | || || || || || Sbjct 1854084 ACCGATACCGCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTTGAGAGTGTCGTAGATACC 1854025 Query 81561 CTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGA 81620 ||||| || | ||||| | | | ||| || |||||||| ||| | | Sbjct 1854024 GTCGATAGAGTCATCCTTCATCGCGACGAGGAAGCATGACGACATCTGGGGGTGCTGGGT 1853965 Query 81621 GCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATA 81680 || || ||||| || || || | ||||| |||| || || | ||||| |||| || Sbjct 1853964 ACCAGCGTTGAAGAGAGTAGGCGAGGCGTGGGTGAAGTAGCGCTCGGACATGAGGTTGTA 1853905 Query 81681 GGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACAT 81740 ||| || |||| | ||| | ||| ||||| ||||| |||| |||||||| | ||| Sbjct 1853904 GGTCTCAATGACCTTTTCAATGTTGTCGCCGTGGATACCAATAGAAACACGCATGATCAT 1853845 Query 81741 GTACTGGGG 81749 || |||||| Sbjct 1853844 GTGCTGGGG 1853836 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 80035 CGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATA 80094 || || || || ||||| || || |||||||| || |||||||||||| | |||||| Sbjct 1855568 CGGGTACGAAGGTAGTAGATACCGGTCTTGAGACCGCGCTTCCAGCCGTAGAAGTGCATG 1855509 Query 80095 GAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAG 80154 ||| | |||| | | | |||||| || | ||||||| ||||||||||| | Sbjct 1855508 GAAGTAAGCTGGGAGAACGAGGGGTTGGACAGGTGAATGTTCAACGACTGAGACTGGTCG 1855449 Query 80155 ATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACT 80214 ||||| || ||||| || || || | ||||| | ||||| || | ||| ||||| || Sbjct 1855448 ATGAAGGCACCACGGTCGGCAGCAAGGTCAATGACAGACTTCTGCGAAATCTCCCAGACA 1855389 Query 80215 GT 80216 || Sbjct 1855388 GT 1855387 >seq12 Length=785499 Score = 188 bits (208), Expect = 8e-43 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || ||||| ||||| |||||||| || |||||||| Sbjct 767639 ATGCAGATTTTCGTCAAGACTCTCACCGGAAAGACCATTACTCTGGAAGTTGAGTCCTCC 767698 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || ||||||||||||||||| |||||||| |||||| Sbjct 767699 GACACTATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAG 767758 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| |||||||||| ||||| || | ||||| || Sbjct 767759 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGTACTCTGTCCGACTACAAC 767818 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||||||||| || ||| | ||||| |||||||| Sbjct 767819 ATCCAGAAGGAGTCCACTCTTCACCTCGTCCTTCGTCTCCGCGGTGG 767865 Score = 183 bits (202), Expect = 3e-41 Identities = 164/206 (80%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 |||||||||||||| || ||||||||||| ||||| ||| | ||| | ||| ||||| Sbjct 767432 CTTACCGGCAAGACCATCACTCTTGAGGTGGAGTCTTCTGACACCATCGACAATGTGAAG 767491 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || |||||||||||||| ||||| || |||||||||||||| ||||| || || Sbjct 767492 GCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTCTCATTTTCGCCGGC 767551 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 ||||| |||||||| | |||||||| | ||||| || |||| ||||| || ||||| Sbjct 767552 AAGCAGCTCGAGGACGGCCGTACCCTTTCGGACTACAACATCCAGAAGGAGTCTACTCTC 767611 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || ||| | || || |||||||| Sbjct 767612 CACCTCGTCCTTCGCCTCCGCGGTGG 767637 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || |||||||| ||||| Sbjct 767867 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACGATCACGCTTGAGGTCGAGTCGTCG 767926 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || |||||||||||||| |||||||| |||||| Sbjct 767927 GACACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 767986 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || |||||||||||||| |||||||| | || || || | ||||| || Sbjct 767987 CAGCGCCTGATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGCACGCTGTCGGACTACAAC 768046 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || || || || || | ||||| |||||||| Sbjct 768047 ATTCAGAAGGAGTCGACCCTGCACCTTGTTCTCCGTCTGCGCGGTGG 768093 Score = 176 bits (194), Expect = 5e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| |||||||| ||||| ||||| Sbjct 768095 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACGATTACTCTCGAGGTCGAGTCGTCC 768154 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || ||||||||||||||||| |||||||| |||||| Sbjct 768155 GACACCATCGACAACGTTAAGGCGAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 768214 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| || ||||| | |||||| || | ||||| || Sbjct 768215 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGACGGTCGTACGCTGTCGGACTACAAC 768274 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || || || || || ||| | ||||| || || || || Sbjct 768275 ATCCAGAAGGAGTCGACCCTCCACCTCGTCCTCCGTCTGCGTGGAGGCCA 768324 Score = 156 bits (172), Expect = 5e-33 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 |||||||||||||| || || || ||||| ||||| || | ||||| || | ||| Sbjct 767157 CTTACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATTGACAACGTCAAG 767216 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || |||||||||||||| || || || |||||||||||||| ||||| || || Sbjct 767217 GCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATTTTCGCGGGC 767276 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 ||||| |||||||| | |||||||| | ||||| || | || ||||| || ||||| Sbjct 767277 AAGCAGCTCGAGGACGGCCGTACCCTTTCGGACTACAACATTCAGAAGGAGTCTACTCTC 767336 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || ||| | ||||| || ||||| Sbjct 767337 CACCTCGTCCTTCGTCTCCGTGGTGG 767362 >seq1 Length=5410471 Score = 140 bits (154), Expect = 4e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || || ||||||||||| || || ||||| ||||| || | ||| | Sbjct 4378498 GTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCCGACACCATCGAC 4378557 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||||| || || |||||||||||||| || || || ||||||||||| || || Sbjct 4378558 AACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATC 4378617 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || || || ||||| |||||||| | || ||||| | ||||| || |||| ||||| Sbjct 4378618 TTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAG 4378677 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || || ||| | || || || ||||| Sbjct 4378678 TCGACCCTCCACCTCGTCCTCCGCCTGCGTGGTGG 4378712 >seq7 Length=1006632 Score = 125 bits (138), Expect = 8e-24 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || ||||||||||| || || |||||||| ||||| || | ||| | Sbjct 519634 GTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCTTCGGACACCATCGAC 519693 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||||| || || |||||||||||||| || || || |||||||||||||| || Sbjct 519694 AACGTCAAGGCGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGTCTCATC 519753 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 || || || ||||| |||||||| | || ||||| | ||||| Sbjct 519754 TTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTA 519797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310285937920