Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq4 93.3 4e-14 >seq4 Length=2369537 Score = 93.3 bits (102), Expect = 4e-14 Identities = 172/247 (70%), Gaps = 4/247 (2%) Strand=Plus/Plus Query 6780 CCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGT 6839 ||||||||||||| || | | |||||||| ||||| ||||| || | ||| Sbjct 836274 CCTTCGGGTTCCAAGCACTGAGCACGATCCGCCTGTCTGTCGGGTTATGCACAATCTTGT 836333 Query 6840 CGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCG-CTCCCCCGA 6898 |||||| | ||| |||||||| | || || || | |||||| | ||| || | | Sbjct 836334 GGATCACCTCCTGGAGCTGGTCGACCCCTTGCCCTGCATAGTCGTCGTCGGCTGTCTTG- 836392 Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 ||||||||||| || || | ||||||||| ||||| || || |||| ||| || ||| | Sbjct 836393 TACTCCGCCCCGAAATGGCGCCACTGGAAGCCGTACACGGGTCCCAGGTCCCCTTCCCTC 836452 Query 6959 CGAGATGGGAACCCCCGC-TTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 || | | | |||| | || |||||| | || | ||||| |||||||||| | Sbjct 836453 CG-GTGGCCCAGCCCCACTTTATCCAGATACTCCCTGCTCCCGTTCCCGTCCCAGATATG 836511 Query 7018 CACCCCC 7024 ||| ||| Sbjct 836512 CACACCC 836518 Score = 93.3 bits (102), Expect = 4e-14 Identities = 172/247 (70%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 34321 gggggTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAA-GCGGGGGTTCC 34379 ||| ||| | |||||||||| ||||| | || | |||||| || | |||| | Sbjct 836518 GGGTGTGCATATCTGGGACGGGAACGGGAGCAGGGAGTATCTGGATAAAGTGGGGCTGGG 836459 Query 34380 CATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGG 34439 | | ||| ||| || ||| |||| || || ||||| ||||||||| | || || |||| Sbjct 836458 CCAC-CGGAGGGAAGGGGACCTGGGACCCGTGTACGGCTTCCAGTGGCGCCATTTCGGGG 836400 Query 34440 CGGAGTATCGGGGGAG-CGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTAC 34498 ||||||| | | || ||| | |||||| | || || || | |||||||| ||| | Sbjct 836399 CGGAGTA-CAAGACAGCCGACGACGACTATGCAGGGCAAGGGGTCGACCAGCTCCAGGAG 836341 Query 34499 GTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAAC 34558 |||||| ||| | || ||||| ||||| |||||||| | | || |||||| Sbjct 836340 GTGATCCACAAGATTGTGCATAACCCGACAGACAGGCGGATCGTGCTCAGTGCTTGGAAC 836281 Query 34559 CCGAAGG 34565 ||||||| Sbjct 836280 CCGAAGG 836274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262310347520