Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq12 98.7 7e-16 >seq12 Length=785499 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || ||||| ||||| || || ||||| |||||||| ||| | Sbjct 767639 ATGCAGATTTTCGTCAAGACTCTCACCGGAAAGACCATTACTCTGGAAGTTGAGTCCTCC 767698 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | | || || ||| ||||| || || | || || || || Sbjct 767699 GACACTATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAG 767758 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || ||||| || || || || || | || ||| | ||| |||||| Sbjct 767759 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGTACTCTGTCCGACTACAAC 767818 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 767819 ATCCAGAAGGAGTCCAC 767835 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| ||||||||||| || ||||| |||||||| || || || | Sbjct 768095 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACGATTACTCTCGAGGTCGAGTCGTCC 768154 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || |||| | || ||| ||||| || || | || || || || Sbjct 768155 GACACCATCGACAACGTTAAGGC-GAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCA 768213 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || || || || || || |||| || || | || ||||| Sbjct 768214 GCAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGACGGTCGTACGCTGTCGGACTACAA 768273 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 768274 CATCCAGAAGGAGTCGAC 768291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009534088128