Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq12 132 1e-25 seq1 118 3e-21 seq7 102 2e-16 >seq12 Length=785499 Score = 132 bits (146), Expect = 1e-25 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||||||||| || || || |||| ||||| || | | || | || || Sbjct 767622 AGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCC 767563 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||| || || || || |||||||| ||||| || |||||||| Sbjct 767562 TCGAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 767503 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| ||||||||||| || | ||||| || | ||||| ||| Sbjct 767502 TGGATCTTGGCCTTCACATTGTCGATGGTGTCAGAAGACTCCACCTCAAGAGTGATGGTC 767443 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 767442 TTGCCGGT 767435 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||| || || || || || || | ||||| || | || || | || || Sbjct 768078 AGAACAAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGACAGCGTGCGGCCGTCC 768019 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| || || || ||||| || ||||| || |||||||| Sbjct 768018 TCGAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 767959 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || | || || || | |||||||||| Sbjct 767958 TGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGACGACTCGACCTCAAGCGTGATCGTC 767899 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||| || | ||| | ||||| Sbjct 767898 TTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 767867 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||| || || || || |||| ||||| || | || || | || || Sbjct 768306 AGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTACGACCGTCC 768247 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || || ||||| || ||||| || |||||||| Sbjct 768246 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 768187 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || ||||||||||| || | || || || | || |||||| Sbjct 768186 TGAATCTTCGCCTTAACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGAGTAATCGTC 768127 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| | || || | ||| | ||||| Sbjct 768126 TTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 768095 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||||||||| || || || || | ||||| || | | || | || || Sbjct 767347 AGGACGAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTACGGCCGTCC 767288 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||| || || || || |||||||| || || || |||||||| Sbjct 767287 TCGAGCTGCTTGCCCGCGAAAATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 767228 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || || |||||||| |||| || || || | ||||| ||| Sbjct 767227 TGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTC 767168 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 767167 TTGCCGGT 767160 >seq1 Length=5410471 Score = 118 bits (130), Expect = 3e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||| || || || || |||| ||||| || | | || | || || Sbjct 4378697 AGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 4378638 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| || || || || |||||||| Sbjct 4378637 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 4378578 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || | ||||| || | ||||| ||| Sbjct 4378577 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTC 4378518 Query 225682 TTGCCCGT 225689 |||||||| Sbjct 4378517 TTGCCCGT 4378510 >seq7 Length=1006632 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| || |||||||| || || || |||||||| || ||||| ||| Sbjct 519779 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCC 519720 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| |||||||| ||| || ||||||||||| || | ||||| || | ||| Sbjct 519719 TTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTG 519660 Query 225676 ATCGTCTTGCCCGT 225689 || |||||||| || Sbjct 519659 ATGGTCTTGCCGGT 519646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530955531104