Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq12 100 4e-16 >seq12 Length=785499 Score = 100 bits (110), Expect = 4e-16 Identities = 171/246 (70%), Gaps = 3/246 (1%) Strand=Plus/Plus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| ||||| || || ||||| || || | | || | ||||| || || ||||| Sbjct 745607 ACAAGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAG 745666 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 || ||||| || ||||| || |||||||| || || | || || |||||||| ||||| Sbjct 745667 GCCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAACGATCCAGAGAAGAA 745726 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTA--ACTGGCT-TCGTTGTG 48316 || || || ||||| ||||| || | || | ||| | | || ||| |||| Sbjct 745727 GATACCCTCAACGGCGGCAAAGGCAATGAGACGCTCCGCAAAGGACGAGCTGTCGTCCGA 745786 Query 48317 TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 ||||| || | ||||| || ||||||||||| | || || || || || ||||| || Sbjct 745787 GATCCAACGAAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATAGCTTT 745846 Query 48377 AAAGAG 48382 ||||| Sbjct 745847 GAAGAG 745852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668661066240