Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01]
16 sequences; 23,647,732 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq12 132 1e-25
seq1 96.9 8e-15
>seq12
Length=785499
Score = 132 bits (146), Expect = 1e-25
Identities = 159/214 (74%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| || |||||||| ||||| || ||||||||||| |||| | ||| | |||||
Sbjct 767850 AGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCC 767791
Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
|| || ||||| ||||||||||| || | ||||||||| | | || || ||||| |
Sbjct 767790 TCGAGCTGCTTT--CCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGT 767733
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070
| ||||| || ||||| | || | |||| || ||| ||||| |||||||| |
Sbjct 767732 CCTGAATCTTGGCCTTGACGTTGTCGATAGTGTCGGAGGACTCAACTTCCAGAGTAATGG 767673
Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || || ||||||||||| ||||| | ||||||
Sbjct 767672 TCTTTCCGGTGAGAGTCTTGACGAAAATCTGCAT 767639
Score = 113 bits (124), Expect = 1e-19
Identities = 155/215 (72%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| || || || || ||||| || ||||||||||| || | | || | || ||
Sbjct 768307 GAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTACGACCGTC 768248
Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009
|| || ||||| || |||||||| || | ||||||||| | | || || |||||
Sbjct 768247 CTCAAGCTGCTTT--CCAGCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTG 768190
Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069
|| ||||| || || || | || | | |||| || ||| || || ||||||||
Sbjct 768189 TCCTGAATCTTCGCCTTAACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGAGTAATC 768130
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||||||||| ||||| ||||||| ||||||
Sbjct 768129 GTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 768095
Score = 96.9 bits (106), Expect = 8e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||| ||||| || || || ||||| || || |||||||| || | | || | || ||
Sbjct 768079 GAGAACAAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGACAGCGTGCGGCCGTC 768020
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || || || ||||| || | ||||||||| | | || || ||||| ||
Sbjct 768019 CTCGAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTC 767960
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|| || || ||||| | || | | |||| || ||| || ||||| || || ||
Sbjct 767959 CTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGACGACTCGACCTCAAGCGTGATCGT 767900
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| ||||||||||| ||||||| ||||||
Sbjct 767899 CTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 767867
Score = 87.8 bits (96), Expect = 4e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| || || ||||||||||| || ||||||||||| || | | || | || ||
Sbjct 767622 AGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCC 767563
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || |||||||| || || | ||||||||| | | || || ||||| ||
Sbjct 767562 TCGAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 767503
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| || || || ||| | || | | |||| ||| ||| || |||||||| || ||
Sbjct 767502 TGGATCTTGGCCTTCACATTGTCGATGGTGTCAGAAGACTCCACCTCAAGAGTGATGGTC 767443
Query 152073 TTGCCCGTGAG 152083
||||| || ||
Sbjct 767442 TTGCCGGTAAG 767432
>seq1
Length=5410471
Score = 96.9 bits (106), Expect = 8e-15
Identities = 142/201 (71%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| || || || || ||||| || ||||||||||| || | | || | || ||
Sbjct 4378698 GAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTC 4378639
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || ||||||||||| || | ||||||||| | | ||| || ||||| ||
Sbjct 4378638 CTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 4378579
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|| || || ||||| | || | | |||| || ||| || || || || |||||
Sbjct 4378578 CTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGT 4378519
Query 152072 TTTGCCCGTGAGAGTCTTCAC 152092
||||||||||| ||||| ||
Sbjct 4378518 CTTGCCCGTGAGGGTCTTGAC 4378498
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153820563466736
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |