Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq12 132 1e-25 seq1 96.9 8e-15 >seq12 Length=785499 Score = 132 bits (146), Expect = 1e-25 Identities = 159/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || |||||||| ||||| || ||||||||||| |||| | ||| | ||||| Sbjct 767850 AGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCC 767791 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||||||||| || | ||||||||| | | || || ||||| | Sbjct 767790 TCGAGCTGCTTT--CCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGT 767733 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | ||||| || ||||| | || | |||| || ||| ||||| |||||||| | Sbjct 767732 CCTGAATCTTGGCCTTGACGTTGTCGATAGTGTCGGAGGACTCAACTTCCAGAGTAATGG 767673 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||||||||| ||||| | |||||| Sbjct 767672 TCTTTCCGGTGAGAGTCTTGACGAAAATCTGCAT 767639 Score = 113 bits (124), Expect = 1e-19 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || || || || ||||| || ||||||||||| || | | || | || || Sbjct 768307 GAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTACGACCGTC 768248 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| || |||||||| || | ||||||||| | | || || ||||| Sbjct 768247 CTCAAGCTGCTTT--CCAGCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTG 768190 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 || ||||| || || || | || | | |||| || ||| || || |||||||| Sbjct 768189 TCCTGAATCTTCGCCTTAACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGAGTAATC 768130 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||||||||| ||||| ||||||| |||||| Sbjct 768129 GTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 768095 Score = 96.9 bits (106), Expect = 8e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| ||||| || || || ||||| || || |||||||| || | | || | || || Sbjct 768079 GAGAACAAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGACAGCGTGCGGCCGTC 768020 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || || ||||| || | ||||||||| | | || || ||||| || Sbjct 768019 CTCGAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTC 767960 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || ||||| | || | | |||| || ||| || ||||| || || || Sbjct 767959 CTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGACGACTCGACCTCAAGCGTGATCGT 767900 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||||||||| ||||||| |||||| Sbjct 767899 CTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 767867 Score = 87.8 bits (96), Expect = 4e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || ||||||||||| || ||||||||||| || | | || | || || Sbjct 767622 AGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCC 767563 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || |||||||| || || | ||||||||| | | || || ||||| || Sbjct 767562 TCGAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 767503 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || ||| | || | | |||| ||| ||| || |||||||| || || Sbjct 767502 TGGATCTTGGCCTTCACATTGTCGATGGTGTCAGAAGACTCCACCTCAAGAGTGATGGTC 767443 Query 152073 TTGCCCGTGAG 152083 ||||| || || Sbjct 767442 TTGCCGGTAAG 767432 >seq1 Length=5410471 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || || || || ||||| || ||||||||||| || | | || | || || Sbjct 4378698 GAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTC 4378639 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||||||||| || | ||||||||| | | ||| || ||||| || Sbjct 4378638 CTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 4378579 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || ||||| | || | | |||| || ||| || || || || ||||| Sbjct 4378578 CTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGT 4378519 Query 152072 TTTGCCCGTGAGAGTCTTCAC 152092 ||||||||||| ||||| || Sbjct 4378518 CTTGCCCGTGAGGGTCTTGAC 4378498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820563466736