Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq12 178 3e-39 seq1 156 9e-33 seq7 129 1e-24 >seq12 Length=785499 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| ||||| || || || || || | || || || || ||||||||||| | Sbjct 768094 ACCACCGCGCAGACGGAGAACAAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGA 768035 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| ||||| || || || || |||||||||| || || |||||| || Sbjct 768034 CAGCGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCAGGAGG 767975 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| || || ||| | ||||| |||||||| | ||||| Sbjct 767974 AATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGACGACTCGAC 767915 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| || || | |||||| ||||| |||||||| Sbjct 767914 CTCAAGCGTGATCGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 767867 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || ||||| || || || | ||| || || |||||||||||||| | Sbjct 767866 ACCACCGCGGAGACGAAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 767807 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| || || || ||||| ||||||| || || ||||| || Sbjct 767806 CAGAGTACGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGG 767747 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| || ||||| || || ||| | ||||||||||| || | || || Sbjct 767746 AATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATAGTGTCGGAGGACTCAAC 767687 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| ||||| || ||||| || || | |||||| ||||| |||||||| Sbjct 767686 TTCCAGAGTAATGGTCTTTCCGGTGAGAGTCTTGACGAAAATCTGCAT 767639 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || || || || || | || || || |||||||||||||| | Sbjct 768321 CCTCCACGCAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 768262 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| || || ||||| || || || || || ||||| | ||| || |||||| ||| Sbjct 768261 AGCGTACGACCGTCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGA 768202 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| || ||||| || || ||| | ||||| ||||| || | ||||| Sbjct 768201 ATGCCCTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATGGTGTCGGACGACTCGACC 768142 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||| |||||||| ||||| | ||||||||||| |||||||| Sbjct 768141 TCGAGAGTAATCGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 768095 Score = 138 bits (152), Expect = 2e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || |||||||| || || || | || || || |||||||||||||| | Sbjct 767638 ACCACCGCGGAGGCGAAGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCGA 767579 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||| ||||| || || || ||||| || || | ||| || ||||| || Sbjct 767578 AAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCGGGGGG 767519 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| || || || | ||||| ||||| |||| || || Sbjct 767518 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCAGAAGACTCCAC 767459 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 || |||||||| ||||| || || Sbjct 767458 CTCAAGAGTGATGGTCTTGCCGGT 767435 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| || || || | || || || || ||||||||||| | Sbjct 767363 ACCACCACGGAGACGAAGGACGAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCCGA 767304 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||| ||||| || || || || || || || | ||| || ||||| || Sbjct 767303 AAGGGTACGGCCGTCCTCGAGCTGCTTGCCCGCGAAAATGAGACGCTGCTGGTCGGGGGG 767244 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| || || ||| | || || |||||||| | ||||| Sbjct 767243 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCGAC 767184 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 ||||| ||||| ||||| || || Sbjct 767183 CTCGAGGGTGATGGTCTTGCCGGT 767160 Score = 93.3 bits (102), Expect = 9e-14 Identities = 135/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 230191 AGGAGTTCATTTGCGACGCTATTCCT-TGCCGTCTTATCGGCATGAATGCTGATCTCATG 230249 |||||||| | ||| ||| | || || | ||| ||||||||||| || | |||||| Sbjct 745527 AGGAGTTCCTCACCGAGGCTCTCCCCGTGTC-TCTCATCGGCATGAACGCCAACCTCATG 745469 Query 230250 GGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTG 230309 | || || || || || || || || ||| | |||| || || || ||||||| | Sbjct 745468 TGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTCGTCGCCCTCGGCAACGAGAAGATT 745409 Query 230310 TATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAAC 230369 || || || | |||||||||| ||||||||| | || || || ||||| || | ||| Sbjct 745408 TACAAGTCGACCAACCCCTTCGACTTTATGGAGATGATCTCGCTGCAGGGCAAGGCCAAC 745349 Query 230370 TTCTTCGA 230377 |||||||| Sbjct 745348 TTCTTCGA 745341 >seq1 Length=5410471 Score = 156 bits (172), Expect = 9e-33 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || || || | || || || |||||||||||||| | Sbjct 4378713 ACCACCACGCAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 4378654 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||| ||||| || || || ||||| ||||| | || || |||||| || Sbjct 4378653 AAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGG 4378594 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| || || ||| | ||||| ||||| || | || || Sbjct 4378593 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCCAC 4378534 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||| ||||| ||||| ||||| | ||||| || Sbjct 4378533 CTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGAC 4378498 Score = 86.0 bits (94), Expect = 1e-11 Identities = 99/131 (76%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 316167 GTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGATGATC 316226 ||| ||||||| |||||||| | ||||||| || ||| |||||| || | Sbjct 3940717 GTCCTCACCGGTCTGGTAACGCCAGAGCATGTACTCGAGAGGAGTCGAGTCAAGGTGCTG 3940658 Query 316227 CTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAA-GACGCATATTTGGATGCTTCC 316285 ||||||||||||||||||||||| || |||||| ||| |||| | || || ||||||| Sbjct 3940657 GTCGATGTGGTGGAAAGCGTGCTGGGCAACGTAACCAATGACG-AGGTTAGGGTGCTTCC 3940599 Query 316286 AAACGCTACCG 316296 | ||| ||||| Sbjct 3940598 AGACGGTACCG 3940588 >seq7 Length=1006632 Score = 129 bits (142), Expect = 1e-24 Identities = 128/166 (77%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 ||||||| | ||| |||||||| ||||| || || || ||||| ||||| | ||| || | Sbjct 519799 TGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCT 519740 Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 |||| || |||||||||||||| |||||||| || || ||| | ||||| ||||||| Sbjct 519739 GGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCG 519680 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||| || || || || ||||| ||||| || || | ||||| || Sbjct 519679 AAGACTCCACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 519634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738985418464