Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20brassicae_20[genbank_20GCA_5F001600295.1_202016-03-01] 16 sequences; 23,647,732 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq12 156 4e-33 seq1 136 4e-27 seq7 93.3 4e-14 >seq12 Length=785499 Score = 156 bits (172), Expect = 4e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | || || || || ||| ||||||||| ||||| |||||||| Sbjct 767865 CCACCGCGGAGACGAAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 767806 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || ||||||||||| |||||||| ||||||||||| ||||| | ||| Sbjct 767805 AGAGTACGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGA 767746 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| | || || | ||| | | | ||||||| ||||| || Sbjct 767745 ATGCCCTCCTTGTCC-TGAATCTTGGCCTTGACGTTGTCGATAGTGTCGGAGGACTCAAC 767687 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || || || ||||| |||||||||||||| Sbjct 767686 TTCCAGAGTAATGGTCTTTCCGGTGAGAGTCTTGACGAAAATCTGCAT 767639 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | || || ||||| || ||||||||||||||| ||||| || Sbjct 768093 CCACCGCGCAGACGGAGAACAAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAC 768034 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| ||||||||||| || || || ||||||||||| ||||| | ||| Sbjct 768033 AGCGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGA 767974 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| || | || || | ||| | | | ||||| |||||| || Sbjct 767973 ATGCCCTCCTTGTCC-TGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGACGACTCGAC 767915 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||| ||||| || || || || ||||| ||||| |||||||| Sbjct 767914 CTCAAGCGTGATCGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 767867 Score = 114 bits (126), Expect = 1e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | || || || || || ||||||||| ||||| ||||| || Sbjct 767637 CCACCGCGGAGGCGAAGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAA 767578 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| |||||||||||||||||||| || || ||||| ||||| | |||| Sbjct 767577 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCGGGGGGA 767518 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA 41786 | || |||||||||| ||| || ||||| Sbjct 767517 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCA 767487 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || || ||||||||||||||| ||||| || Sbjct 767362 CCACCACGGAGACGAAGGACGAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAA 767303 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| |||||||||||||| ||||| || || ||||| ||||| | ||| Sbjct 767302 AGGGTACGGCCGTCCTCGAGCTGCTTGCCCGCGAAAATGAGACGCTGCTGGTCGGGGGGG 767243 Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778 | || |||||||||| ||| || Sbjct 767242 ATGCCCTCCTTGTCCTGGATCTT 767220 >seq1 Length=5410471 Score = 136 bits (150), Expect = 4e-27 Identities = 155/204 (76%), Gaps = 8/204 (4%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| ||||| || |||||||| |||| |||||||||||||||||||| Sbjct 4378677 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 4378618 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 || |||||||| ||||| | ||| | || |||||||||| || | || || | ||| Sbjct 4378617 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC-TGGATCTTGGCCTTGACGT 4378559 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | | |||||| |||||||||||| | || || || || ||||| || ||||| | Sbjct 4378558 TGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGA 4378499 Query 41850 CGAAAATCTGCATGTTATCGATGG 41873 | | ||||||||| ||||| Sbjct 4378498 C----CTGTGCATGTTA--GATGG 4378481 >seq7 Length=1006632 Score = 93.3 bits (102), Expect = 4e-14 Identities = 121/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 41687 TAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGG 41746 ||||| || |||||||| |||| |||||||||||||||||||| || || ||||| ||| Sbjct 519797 TAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGG 519738 Query 41747 TCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCT 41805 || | ||| | | |||||||||| || | || || | ||| | | | ||||| Sbjct 519737 TCGGGGGGGATACCCTCCTTGTCC-TGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGA 519679 Query 41806 CGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 ||||||||||| | || || || || || || || ||||| || Sbjct 519678 AGACTCCACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 519634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303907539200