Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq11 123 5e-23 seq3 100 6e-16 seq6 84.2 5e-11 >seq11 Length=562504 Score = 123 bits (136), Expect = 5e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCA-TGTCGCCTTATTGGCATGAACGCTGAACT 230468 ||| |||||||| || || || | || |||||| | || || |||||||||| || Sbjct 37068 GAACAGGAGTTCCTTACCGAGGCGCTCCCCGTGTCGC-TCATCGGTATGAACGCTGGTCT 37126 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 ||| | || ||||| || ||||| ||||||||| | | || || ||||| |||| || Sbjct 37127 CATGTGCCAATACATTGAGTTCGTCGCCGACCGCCTGCTCGTCGCCCTTGGCAACGACAA 37186 Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588 | |||||||| | ||||||||| | ||||||||| | || || || ||||| ||| | Sbjct 37187 GATCTACAACTCGACGAACCCCTTCGACTTTATGGAGATGATCTCTCTGCAAGGCAAGGC 37246 Query 230589 CAACTTCTTCGA 230600 |||||||||||| Sbjct 37247 CAACTTCTTCGA 37258 >seq3 Length=3725192 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 230470 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAA 230529 ||| | |||||||| |||||||| || |||||| || | || ||||| || || ||||| Sbjct 3008448 ATGTGCCAGTACATGGAATTCGTCGCTGACCGCCTTGTCGTCGCACTGGGCTATGAGAAG 3008507 Query 230530 GTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACC 230589 | |||||| | | || ||||| | | ||||||||||| ||||| ||||| || || Sbjct 3008508 ATCTACAACGCAACCAATCCCTTCGACTGGATGGAGCTCATCTCGCTGCAAGGCAAAGCC 3008567 Query 230590 AACTTCTTCGAAAAGCGTGTCAG 230612 ||||| ||||| ||| ||||| Sbjct 3008568 AACTTTTTCGAGTCGCGCGTCAG 3008590 >seq6 Length=1753189 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/88 (82%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 165601 CTCGCCATAGCTCAGTTGGAAGAGCACCGGACTGTAAATGAAAACACATTAATCCGTAGG 165660 ||| | ||||||||||||| ||||| ||||||||||| ||| | | || ||||||| || Sbjct 214878 CTCTCAATAGCTCAGTTGGTAGAGCGCCGGACTGTAACTGATACCTCA--AATCCGTCGG 214821 Query 165661 TCCCCCGTTCGAACCGGGGTGGCGAGAA 165688 ||||| ||||||| | |||| | ||||| Sbjct 214820 TCCCCTGTTCGAATCAGGGTTGGGAGAA 214793 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/88 (82%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 165601 CTCGCCATAGCTCAGTTGGAAGAGCACCGGACTGTAAATGAAAACACATTAATCCGTAGG 165660 ||| | ||||||||||||| ||||| ||||||||||| ||| | | || ||||||| || Sbjct 240469 CTCTCAATAGCTCAGTTGGTAGAGCGCCGGACTGTAACTGATACCTCA--AATCCGTCGG 240526 Query 165661 TCCCCCGTTCGAACCGGGGTGGCGAGAA 165688 ||||| ||||||| | |||| | ||||| Sbjct 240527 TCCCCTGTTCGAATCAGGGTTGGGAGAA 240554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823620505640