Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03-
01] 28 sequences; 24,510,922 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq11 123 3e-23
seq1 89.7 6e-13
seq3 87.8 2e-12
>seq11
Length=562504
Score = 123 bits (136), Expect = 3e-23
Identities = 180/252 (71%), Gaps = 3/252 (1%)
Strand=Plus/Minus
Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190
|| ||| || || ||| ||| ||||||||||| | || | |||||||| || ||
Sbjct 36995 CAGACAGGCAAAGTCGGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGT 36936
Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 24250
||| |||||||| ||||||||||| || ||||| || || || ||||| || ||||| ||
Sbjct 36935 GAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAA 36876
Query 24251 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA--ACCGGCGCT-GTC 24307
|| || ||||| || || || || ||||| || | || || | || ||||| |||
Sbjct 36875 AAAGATACCTTCGACGGCGGCGAACGCAATGAGGCGCTCAGCAAAGGACGAGCGCTCGTC 36816
Query 24308 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367
||||| | ||||| ||||||||||| || | || || || ||||| || ||
Sbjct 36815 GGAAATCCAACGGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGC 36756
Query 24368 ATTAAAGAGATA 24379
|| ||||| ||
Sbjct 36755 CTTGAAGAGGTA 36744
>seq1
Length=4014173
Score = 89.7 bits (98), Expect = 6e-13
Identities = 425/673 (63%), Gaps = 2/673 (0%)
Strand=Plus/Plus
Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040
||||| || || | || ||||| | | ||| || ||||| ||| || || |||||
Sbjct 2026505 CCAGGGCACTCGGCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATG 2026564
Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100
||||| ||||| | ||| ||||| || ||||| | | | | ||||| || ||
Sbjct 2026565 AAGAGGTCAGGGACCCAGAGAGCGTAGAACAGATCACGCGCGCGAACCTCCTCCTTGCCG 2026624
Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160
||||| || || ||||| | | || ||| | |||||| || || | ||| |||
Sbjct 2026625 TGGTTCTTGCGGAGGTCAAGGAAGTCGAAAACATCCGCATGCCAGGGCTCAAGGTAGATG 2026684
Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220
| | | ||||| || ||||| || ||||| || | ||| | ||||| | ||
Sbjct 2026685 GCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCAACGTAACGGGCGGTCGCGTCGTAG 2026744
Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280
| | | ||| || | ||||| ||||| ||| ||||| || | || || ||
Sbjct 2026745 GCACGGAGCATGGGGACGATACCGTTGGAGTAACCGTTGGTTCCAGCAATGTACGAGCCC 2026804
Query 54281 CTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCG 54340
|||||||||| || ||| ||||| || || || || | || ||||| |||
Sbjct 2026805 TTGGCACGAATGTTGTGAATGTGGAGACCAATGCCACCAGCAGTCTTGGAGATCTGGGCG 2026864
Query 54341 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 54400
|| || | || || |||||||| || || || ||| |||| | || ||
Sbjct 2026865 CAAGTCTTGAGGGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATAGCGACGAGGAAG 2026924
Query 54401 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 54460
|| ||||| || | | ||| || || || || | ||| || |||||||| ||
Sbjct 2026925 CATGACGACATCTGAGGGTGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGAGTG 2026984
Query 54461 AACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTAT-ATCCCATTGATG 54519
|| | || || | || ||||||||||| || | ||| || | || | ||
Sbjct 2026985 AAGTAGCGCTCGGACATGAGGTTGTACGTCTCAATGACCTTGTCGATGTTGTCACCG-TG 2027043
Query 54520 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 54579
|| || | | |||||||| | ||||||||| || | || | | |||| || ||
Sbjct 2027044 GATACCGATGGAAACACGCATAATCATGTGCTGCGGACGCTCGGCCACCTTGCCGTCAAT 2027103
Query 54580 TTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 54639
|| | || || || | || || ||||| || |||||||| | ||||| ||
Sbjct 2027104 GCGCAAGAGATATGAGCGCTCGAGGGTCTTGAAACCGAAGTAGTTGTAGGCGAAGTCGCG 2027163
Query 54640 TTCGTAAATAATA 54652
||||| || |||
Sbjct 2027164 GTCGTAGATTATA 2027176
>seq3
Length=3725192
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/210 (71%), Gaps = 6/210 (3%)
Strand=Plus/Minus
Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194
|| || || ||| ||| |||||||| |||| | || | || || || || || ||
Sbjct 3008273 CACGCAAAGTCGGTGTGAAGACCCTCATCTCGAGAGATGAGCTCATTCGAGAATGTAAGG 3008214
Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254
|| |||| || || |||||||| ||||| || |||| ||||||||||| || |||||
Sbjct 3008213 CCACGCATGAGACCGCGCTTTTTGAGCCAGAAGATGGCAGCAAATGATCCCGAGAAGAAG 3008154
Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCAT--GT- 24311
|| || || || |||||||| || |||| | | | || |||| |||| | ||
Sbjct 3008153 ATGCCCTCCACACATGCAAAGGCGATCAGTC-TGGTGCGGAA-CGGC-ATGTCGTCCGTG 3008097
Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTTT 24341
|| |||| | ||||| ||||||||||||
Sbjct 3008096 ATGTACTTGAGTGCCCAGTCGGCCTTCTTT 3008067
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593721392197440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |