Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq11 123 3e-23 seq1 89.7 6e-13 seq3 87.8 2e-12 >seq11 Length=562504 Score = 123 bits (136), Expect = 3e-23 Identities = 180/252 (71%), Gaps = 3/252 (1%) Strand=Plus/Minus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 || ||| || || ||| ||| ||||||||||| | || | |||||||| || || Sbjct 36995 CAGACAGGCAAAGTCGGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGT 36936 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 24250 ||| |||||||| ||||||||||| || ||||| || || || ||||| || ||||| || Sbjct 36935 GAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAA 36876 Query 24251 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA--ACCGGCGCT-GTC 24307 || || ||||| || || || || ||||| || | || || | || ||||| ||| Sbjct 36875 AAAGATACCTTCGACGGCGGCGAACGCAATGAGGCGCTCAGCAAAGGACGAGCGCTCGTC 36816 Query 24308 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 ||||| | ||||| ||||||||||| || | || || || ||||| || || Sbjct 36815 GGAAATCCAACGGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGC 36756 Query 24368 ATTAAAGAGATA 24379 || ||||| || Sbjct 36755 CTTGAAGAGGTA 36744 >seq1 Length=4014173 Score = 89.7 bits (98), Expect = 6e-13 Identities = 425/673 (63%), Gaps = 2/673 (0%) Strand=Plus/Plus Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 ||||| || || | || ||||| | | ||| || ||||| ||| || || ||||| Sbjct 2026505 CCAGGGCACTCGGCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATG 2026564 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 ||||| ||||| | ||| ||||| || ||||| | | | | ||||| || || Sbjct 2026565 AAGAGGTCAGGGACCCAGAGAGCGTAGAACAGATCACGCGCGCGAACCTCCTCCTTGCCG 2026624 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 ||||| || || ||||| | | || ||| | |||||| || || | ||| ||| Sbjct 2026625 TGGTTCTTGCGGAGGTCAAGGAAGTCGAAAACATCCGCATGCCAGGGCTCAAGGTAGATG 2026684 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | | | ||||| || ||||| || ||||| || | ||| | ||||| | || Sbjct 2026685 GCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCAACGTAACGGGCGGTCGCGTCGTAG 2026744 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 | | | ||| || | ||||| ||||| ||| ||||| || | || || || Sbjct 2026745 GCACGGAGCATGGGGACGATACCGTTGGAGTAACCGTTGGTTCCAGCAATGTACGAGCCC 2026804 Query 54281 CTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCG 54340 |||||||||| || ||| ||||| || || || || | || ||||| ||| Sbjct 2026805 TTGGCACGAATGTTGTGAATGTGGAGACCAATGCCACCAGCAGTCTTGGAGATCTGGGCG 2026864 Query 54341 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 54400 || || | || || |||||||| || || || ||| |||| | || || Sbjct 2026865 CAAGTCTTGAGGGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATAGCGACGAGGAAG 2026924 Query 54401 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 54460 || ||||| || | | ||| || || || || | ||| || |||||||| || Sbjct 2026925 CATGACGACATCTGAGGGTGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGAGTG 2026984 Query 54461 AACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTAT-ATCCCATTGATG 54519 || | || || | || ||||||||||| || | ||| || | || | || Sbjct 2026985 AAGTAGCGCTCGGACATGAGGTTGTACGTCTCAATGACCTTGTCGATGTTGTCACCG-TG 2027043 Query 54520 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 54579 || || | | |||||||| | ||||||||| || | || | | |||| || || Sbjct 2027044 GATACCGATGGAAACACGCATAATCATGTGCTGCGGACGCTCGGCCACCTTGCCGTCAAT 2027103 Query 54580 TTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 54639 || | || || || | || || ||||| || |||||||| | ||||| || Sbjct 2027104 GCGCAAGAGATATGAGCGCTCGAGGGTCTTGAAACCGAAGTAGTTGTAGGCGAAGTCGCG 2027163 Query 54640 TTCGTAAATAATA 54652 ||||| || ||| Sbjct 2027164 GTCGTAGATTATA 2027176 >seq3 Length=3725192 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/210 (71%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || || ||| ||| |||||||| |||| | || | || || || || || || Sbjct 3008273 CACGCAAAGTCGGTGTGAAGACCCTCATCTCGAGAGATGAGCTCATTCGAGAATGTAAGG 3008214 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 || |||| || || |||||||| ||||| || |||| ||||||||||| || ||||| Sbjct 3008213 CCACGCATGAGACCGCGCTTTTTGAGCCAGAAGATGGCAGCAAATGATCCCGAGAAGAAG 3008154 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCAT--GT- 24311 || || || || |||||||| || |||| | | | || |||| |||| | || Sbjct 3008153 ATGCCCTCCACACATGCAAAGGCGATCAGTC-TGGTGCGGAA-CGGC-ATGTCGTCCGTG 3008097 Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTTT 24341 || |||| | ||||| |||||||||||| Sbjct 3008096 ATGTACTTGAGTGCCCAGTCGGCCTTCTTT 3008067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721392197440