Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03-
01] 28 sequences; 24,510,922 total letters
Query= NC_001650.2
Length=184439
Score E
Sequences producing significant alignments: (Bits) Value
seq7 123 3e-23
>seq7
Length=1643429
Score = 123 bits (136), Expect = 3e-23
Identities = 234/341 (69%), Gaps = 4/341 (1%)
Strand=Plus/Plus
Query 145926 CGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTAT 145985
||||||||| || |||| |||| | || | ||||||| | | |||| |
Sbjct 674407 CGGGTTCCATGCACTGAGCACGATACGCCGATCCGTGGGGTTCTCCATAATCTTGCGGCA 674466
Query 145986 CAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTT--GGAGTCCACGTAC 146043
|| |||| ||||||||||||| || || ||| |||||| ||| | | ||| | |||
Sbjct 674467 CACGTCCATGAGCTGGTCCACTCCTTGGCCCGCGTAATC-GTCGTCGGCAGT-CTTGTAT 674524
Query 146044 GCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTG 146103
| |||||||| || | ||||||||| || || |||||||| |||||||| | ||
Sbjct 674525 TCCGCCCCGAAATGGCGCCACTGGAAACCATACACGGGCCCGAGGTCCCCCTCCCGCCGA 674584
Query 146104 TGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACG 146163
|| || || ||| | ||| |||| | || ||| ||||||| |||||||||| | |||
Sbjct 674585 TGACCGAGGCCGACGCGGTCGAGATACTCGCGGCTCCCGTTGCCGTCCCAGATATGCACG 674644
Query 146164 CCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCG 146223
||| | | |||| ||||||| | || |||| |||||||| ||||| ||
Sbjct 674645 CCCTTTTCCTGCAGCTTGCGCCCGTCCGTGCAACCGCTGACAAACCAGAGGAGCTCCTCA 674704
Query 146224 AGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGG 146264
| ||| || | || || | |||||| || || |||||
Sbjct 674705 ATGACGCCACGGGTAAACACGCGCTTGGTCGTAAGGAGGGG 674745
Score = 91.5 bits (100), Expect = 2e-13
Identities = 119/165 (72%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 145687 GGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGC 145746
||||| || |||| |||| |||||||| || |||| | |||| || || |||| |
Sbjct 674091 GGCTCGACATGGTCACGGTACACGTGCGCATCGCCCATCTGGAGGATAAACTCGCCGGCC 674150
Query 145747 TCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAG 145806
|| |||||| | | |||||||||| || || || | ||||| || |||||||||
Sbjct 674151 TCACAGCCCGTCACATATGCGACCATGTGCGTAAGGAGCGCATAGCTCGCAATGTTGAAG 674210
Query 145807 GGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAG 145851
|| || || || |||| ||| | ||||||||||| | |||||
Sbjct 674211 GGTACGCCGAGGCCCACGTCGCAGCTGCGCTGGTACATCAGGCAG 674255
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 590076593473120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |