Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq7 123 3e-23 >seq7 Length=1643429 Score = 123 bits (136), Expect = 3e-23 Identities = 234/341 (69%), Gaps = 4/341 (1%) Strand=Plus/Plus Query 145926 CGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTAT 145985 ||||||||| || |||| |||| | || | ||||||| | | |||| | Sbjct 674407 CGGGTTCCATGCACTGAGCACGATACGCCGATCCGTGGGGTTCTCCATAATCTTGCGGCA 674466 Query 145986 CAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTT--GGAGTCCACGTAC 146043 || |||| ||||||||||||| || || ||| |||||| ||| | | ||| | ||| Sbjct 674467 CACGTCCATGAGCTGGTCCACTCCTTGGCCCGCGTAATC-GTCGTCGGCAGT-CTTGTAT 674524 Query 146044 GCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTG 146103 | |||||||| || | ||||||||| || || |||||||| |||||||| | || Sbjct 674525 TCCGCCCCGAAATGGCGCCACTGGAAACCATACACGGGCCCGAGGTCCCCCTCCCGCCGA 674584 Query 146104 TGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACG 146163 || || || ||| | ||| |||| | || ||| ||||||| |||||||||| | ||| Sbjct 674585 TGACCGAGGCCGACGCGGTCGAGATACTCGCGGCTCCCGTTGCCGTCCCAGATATGCACG 674644 Query 146164 CCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCG 146223 ||| | | |||| ||||||| | || |||| |||||||| ||||| || Sbjct 674645 CCCTTTTCCTGCAGCTTGCGCCCGTCCGTGCAACCGCTGACAAACCAGAGGAGCTCCTCA 674704 Query 146224 AGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGG 146264 | ||| || | || || | |||||| || || ||||| Sbjct 674705 ATGACGCCACGGGTAAACACGCGCTTGGTCGTAAGGAGGGG 674745 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 145687 GGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGC 145746 ||||| || |||| |||| |||||||| || |||| | |||| || || |||| | Sbjct 674091 GGCTCGACATGGTCACGGTACACGTGCGCATCGCCCATCTGGAGGATAAACTCGCCGGCC 674150 Query 145747 TCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAG 145806 || |||||| | | |||||||||| || || || | ||||| || ||||||||| Sbjct 674151 TCACAGCCCGTCACATATGCGACCATGTGCGTAAGGAGCGCATAGCTCGCAATGTTGAAG 674210 Query 145807 GGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAG 145851 || || || || |||| ||| | ||||||||||| | ||||| Sbjct 674211 GGTACGCCGAGGCCCACGTCGCAGCTGCGCTGGTACATCAGGCAG 674255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590076593473120