Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq11 233 2e-56 seq2 138 1e-27 seq1 105 7e-18 seq3 98.7 1e-15 >seq11 Length=562504 Score = 233 bits (258), Expect = 2e-56 Identities = 343/483 (71%), Gaps = 2/483 (0%) Strand=Plus/Plus Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG 117007 || || ||||||||||| || || ||| |||| |||||||||| |||||||| || ||| Sbjct 36750 TTCAAGGCCATCGAGACCATCCCCTGCATCAAGAAGAAGGCCGACTGGGCGCTCCGTTGG 36809 Query 117008 ATCGCCGGCAGAGAGGCCG-CCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGG 117066 || ||| | ||| | || |||| | |||||||| | || ||||| |||||||| || Sbjct 36810 ATTTCCGAC-GAGCGCTCGTCCTTTGCTGAGCGCCTCATTGCGTTCGCCGCCGTCGAAGG 36868 Query 117067 CGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCC 117126 |||| || || ||| || ||| | || || ||||||||||| || ||||||||||| Sbjct 36869 TATCTTTTTCTCTGGCTCGTTTGCCTCGATCTTCTGGCTCAAGAAGCGTGGCCTCATGCC 36928 Query 117127 CGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGC 117186 |||||| |||||| ||||||||||||||| | ||||||||||| || ||||||||| Sbjct 36929 CGGCCTCACTTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTTCACACCGACTTTGC 36988 Query 117187 CTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGT 117246 |||| |||| |||| ||| | | || ||| | | | | | | |||| | Sbjct 36989 CTGTCTGCTTTTCACCCATCTCCGCCGTCGCCCGCACCCCAACCTCATTGAGAAGATTAT 37048 Query 117247 CACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCT 117306 | ||| || ||| || || ||| ||||| ||||| ||||| || ||| || | Sbjct 37049 CCGCGAGGCCGTCAAGATTGAACAGGAGTTCCTTACCGAGGCGCTCCCCGTGTCGCTCAT 37108 Query 117307 GGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCT 117366 || | || | |||| |||||||| ||||||||||||||| | ||||| | Sbjct 37109 CGGTATGAACGCTGGTCTCATGTGCCAATACATTGAGTTCGTCGCCGACCGCCTGCTCGT 37168 Query 117367 CGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCAT 117426 || || | | || |||| ||||||| || | ||||| | ||||||||| | | || Sbjct 37169 CGCCCTTGGCAACGACAAGATCTACAACTCGACGAACCCCTTCGACTTTATGGAGATGAT 37228 Query 117427 CTC 117429 ||| Sbjct 37229 CTC 37231 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||| ||| |||| |||||| | | Sbjct 28825 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATTACCCTCGAAGTCGAATCGTCG 28884 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| ||||| ||||| | |||||| Sbjct 28885 GACACCATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCGCCCGACCAG 28944 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| || ||||| ||||| || |||| || |||||| ||||||||| Sbjct 28945 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCTGACTACAAC 29004 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || ||||| || Sbjct 29005 ATCCAGAAGGAGTCGACCCTTCATCTTGT 29033 Score = 138 bits (152), Expect = 1e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| || ||||| | || || || | || Sbjct 29281 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACTATCACTCTTGAAGTTGAGTCGTCC 29340 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || |||| ||||| |||||||| ||| | ||||| Sbjct 29341 GACACTATCGACAACG-TGAAGGCGAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCA 29399 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||||||||| ||||| || |||| ||||| || ||||||||| Sbjct 29400 GCAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCCGACTACAA 29459 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||||||| | ||| |||| || || Sbjct 29460 CATTCAGAAGGAGTCGACGTTGCACCTTGT 29489 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||| ||| |||| ||||| | || Sbjct 29053 ATGCAGATCTTCGTCAAGACTCTCACAGGCAAGACCATTACCCTCGAGGTCGAGTCGTCC 29112 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || |||| ||||| ||||| || || | ||||| Sbjct 29113 GACACTATCGACAACG-TGAAGGCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCA 29171 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| || ||||| ||||| || |||| || |||||| |||||||| Sbjct 29172 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAAGACGGTCGTACCCTCTCGGACTACAA 29231 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||| |||||| |||| || || || || | ||| || | || || Sbjct 29232 CATCCAAAAGGAGTCCACACTTCACCTCGTTCTCCGCCTGCGTGGTGG 29279 Score = 129 bits (142), Expect = 6e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 40702 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA- 40760 || || || || |||||||| ||||||||| | || ||||| | | |||| | | | Sbjct 28328 GTCAAGACTCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCTTCGGACACCATCGAC 28387 Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 |||| |||||| || |||| ||||| ||||||||||| | |||||||| || ||||| Sbjct 28388 AACG-TCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGTCTCAT 28446 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880 || || || || ||||| || |||| || |||||| || ||||||||||||||||| Sbjct 28447 CTTTGCCGGAAAGCAGCTCGAGGACGGTCGTACCCTCTCGGATTACAACATCCAGAAGGA 28506 Query 40881 GGCCACGCTGCATCTAGT 40898 | | || || ||||| || Sbjct 28507 GTCGACCCTTCATCTCGT 28524 Score = 113 bits (124), Expect = 5e-20 Identities = 140/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 || || |||||||| ||||| | || || || | | |||| | | | |||| |||| Sbjct 28618 CTTACCGGCAAAACGATCACTCTTGAGGTTGAGTCTTCGGACACCATCGACAACG-TCAA 28676 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || || || | ||||| ||||||||||| | |||||||| || ||||||| || || Sbjct 28677 GGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGTCTCATCTTTGCCGG 28736 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 ||| ||||| || |||| || ||||| ||||||||||||||||||||| | || || Sbjct 28737 CAAGCAGCTCGAGGACGGTCGTACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCT 28796 Query 40890 GCATCTAGT 40898 ||||| || Sbjct 28797 TCATCTTGT 28805 >seq2 Length=3730214 Score = 138 bits (152), Expect = 1e-27 Identities = 151/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 40702 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA- 40760 || || || ||||||||||| || |||||| |||| || || | |||||| | | | Sbjct 3658491 GTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCCGACACCATCGAC 3658432 Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 |||| |||||| || || | ||||| |||||||||||| | |||||||| || ||||| Sbjct 3658431 AACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTCAT 3658373 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880 || ||| ||||| ||||| || || | |||||||| |||||||||||||||||||| Sbjct 3658372 CTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCGGACTACAACATCCAGAAGGA 3658313 Query 40881 GGCCACGCTGCATCTAGT 40898 | | || || || || || Sbjct 3658312 GTCGACCCTCCACCTCGT 3658295 >seq1 Length=4014173 Score = 105 bits (116), Expect = 7e-18 Identities = 125/167 (75%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 40702 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA- 40760 || || || ||||| ||||| ||||||||| |||| ||||| | | |||| | | Sbjct 637070 GTTAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGACACGATCGAC 637129 Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 |||| |||||| || || | ||||| |||||||||||| | |||||||| || || || Sbjct 637130 AACG-TCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGTCTTAT 637188 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 || ||| ||||| ||||| || |||| |||||||| ||||||| Sbjct 637189 CTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACA 637235 >seq3 Length=3725192 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/208 (71%), Gaps = 3/208 (1%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||| ||||| || | ||| | | | || | |||| ||| || | | Sbjct 3008069 AGAAGGCCGACTGGGCACTCAAGTACATCACGGAC-GACATGCCG--TTCCGCACCAGAC 3008125 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 || | ||||| || || |||||| ||||||| ||||| || || ||||| || | Sbjct 3008126 TGATCGCCTTTGCATGTGTGGAGGGCATCTTCTTCTCGGGATCATTTGCTGCCATCTTCT 3008185 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 ||||||| || ||||| ||||||| ||||| || ||| || ||||||||||| | | Sbjct 3008186 GGCTCAAAAAGCGCGGTCTCATGCGTGGCCTTACATTCTCGAATGAGCTCATCTCTCGAG 3008245 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTG 117189 | |||||||| || ||||||||| || Sbjct 3008246 ATGAGGGTCTTCACACCGACTTTGCGTG 3008273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219019673280