Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03-
01] 28 sequences; 24,510,922 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq11 116 3e-21
seq2 104 2e-17
seq1 91.5 1e-13
>seq11
Length=562504
Score = 116 bits (128), Expect = 3e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || ||||||||||| ||| | |||||| ||||||||||| || ||
Sbjct 29477 GTCGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCC 29418
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| |||||||||||||||| ||||| || |||||||||||||| ||| || ||
Sbjct 29417 GCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTC 29358
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | |||| ||||| | ||| || || | || | || ||||| || || ||
Sbjct 29357 ACGTTGTCGATAGTGTCGGACGACTCAACTTCAAGAGTGATAGTCTTGCCAGTGAGGGTC 29298
Query 118722 TTTACAAAAATCTGCAT 118738
|| || |||||||||||
Sbjct 29297 TTGACGAAAATCTGCAT 29281
Score = 113 bits (124), Expect = 4e-20
Identities = 136/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || || ||||||||||| | || || ||||||||||| |||||
Sbjct 28512 GTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTACGACCGTCCTCGAGCTGCTTTCCG 28453
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
|| |||||||||||||||| ||||| || |||||||||||||| ||| || ||
Sbjct 28452 GCAAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTG 28393
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | |||| |||||||| ||||||||| | ||| | || ||||| || |||||
Sbjct 28392 ACGTTGTCGATGGTGTCCGAAGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGAGTC 28333
Query 118722 TTTAC 118726
|| ||
Sbjct 28332 TTGAC 28328
Score = 111 bits (122), Expect = 1e-19
Identities = 147/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594
||| | ||| ||||| ||||| |||||||| || | || || || || |||||
Sbjct 29256 GTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGGGTACGACCGTCTTCAAGCTG 29197
Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654
|| || || |||||||||||||||| |||||||| || ||||||||||| ||| ||
Sbjct 29196 CTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTT 29137
Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714
|| || | |||| ||||| | ||||||||||| ||| | || ||||| ||
Sbjct 29136 CGCCTTCACGTTGTCGATAGTGTCGGACGACTCGACCTCGAGGGTAATGGTCTTGCCTGT 29077
Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738
||||| || || || ||||||||
Sbjct 29076 GAGAGTCTTGACGAAGATCTGCAT 29053
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || || |||||||| || | || || ||||||||||| || ||
Sbjct 29021 GTCGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCG 28962
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
|| |||||||||||||||| ||||| || || ||||||||||| || || ||
Sbjct 28961 GCAAAGATGAGACGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATCTTGGCCTTC 28902
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | |||| |||||||| ||||| |||| ||| | || ||||| || |||||
Sbjct 28901 ACATTGTCGATGGTGTCCGACGATTCGACTTCGAGGGTAATGGTCTTGCCAGTGAGAGTC 28842
Query 118722 TTTACAAAAATCTGCAT 118738
|| || || ||||||||
Sbjct 28841 TTGACGAAGATCTGCAT 28825
Score = 96.9 bits (106), Expect = 3e-15
Identities = 127/176 (72%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || || |||||||| || | || || ||||||||||| || ||
Sbjct 28793 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGACCGTCCTCGAGCTGCTTGCCG 28734
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
|| |||||||||||||||| ||||| || |||||||||||||| || || ||
Sbjct 28733 GCAAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 28674
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAG 118717
|| | |||| |||||||| ||| ||||| | || | |||||||||||| ||
Sbjct 28673 ACGTTGTCGATGGTGTCCGAAGACTCAACCTCAAGAGTGATCGTTTTGCCGGTAAG 28618
>seq2
Length=3730214
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594
||||| || ||||| || || |||||||| || | ||||| ||||||||||||
Sbjct 3658300 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCGAGCTG 3658359
Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654
|| || ||| ||||||| |||||||| ||||| || |||||||||||||| || ||
Sbjct 3658360 CTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 3658419
Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714
|| || | |||| |||||| | ||| ||||||| ||| | || ||||| ||
Sbjct 3658420 GGCCTTGACGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGT 3658479
Query 118715 CAGAGTTTTTAC 118726
|| || || ||
Sbjct 3658480 GAGGGTCTTGAC 3658491
>seq1
Length=4014173
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643
||||||||||| || || ||| |||| ||||||||||| || || || ||||||||||||
Sbjct 637212 TCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTG 637153
Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703
|| || || || || | |||| ||||||| ||||||||||| ||| |
Sbjct 637152 TCCTGGATCTTCGCCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGATG 637093
Query 118704 GTTTTGCCGGTCAGAGTTTTTAC 118726
|| |||||||| || || || ||
Sbjct 637092 GTCTTGCCGGTGAGGGTCTTAAC 637070
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433830251955376
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |