Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03-
01] 28 sequences; 24,510,922 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq11 113 5e-20
seq2 107 2e-18
seq1 87.8 2e-12
>seq11
Length=562504
Score = 113 bits (124), Expect = 5e-20
Identities = 149/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040
||||| || |||||| ||||| ||||| || | ||||| || |||| || ||||||
Sbjct 29483 TGCAACGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGCTGC 29424
Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100
|| || ||||| ||||| ||||||||||||| || | || |||||||||| ||| | ||
Sbjct 29423 TTGCCCGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC-TGAATCTT 29365
Query 43101 TGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159
| | ||| | | | |||||| ||| || || || | ||||| || ||||| ||
Sbjct 29364 CGCCTTCACGTTGTCGATAGTGTCGGACGACTCAACTTCAAGAGTGATAGTCTTGCCAGT 29305
Query 43160 TAGCGTCTTTACAAAGATTTGCAT 43183
|| ||||| || || || |||||
Sbjct 29304 GAGGGTCTTGACGAAAATCTGCAT 29281
Score = 109 bits (120), Expect = 6e-19
Identities = 145/199 (73%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 42986 TGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACC 43045
|||| ||||||||| || ||||| || | || || || |||| || |||||||| ||
Sbjct 29250 TGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGGGTACGACCGTCTTCAAGCTGCTTGCC 29191
Query 43046 AGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTT 43105
|| || ||||| ||||||||||||| || | | |||||||||| ||| | || | |
Sbjct 29190 GGCAAAGATGAGACGCTGCTGGTCGGGAGGAATACCCTCCTTGTCC-TGAATCTTCGCCT 29132
Query 43106 GAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCG 43164
||| | | | |||||| ||| || || |||| || ||||| ||||| || || |
Sbjct 29131 TCACGTTGTCGATAGTGTCGGACGACTCGACCTCGAGGGTAATGGTCTTGCCTGTGAGAG 29072
Query 43165 TCTTTACAAAGATTTGCAT 43183
|||| || ||||| |||||
Sbjct 29071 TCTTGACGAAGATCTGCAT 29053
Score = 107 bits (118), Expect = 2e-18
Identities = 139/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| |||| || || || |||| || |||||||| || || ||
Sbjct 29016 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAA 28957
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
||||| ||||||||||||| ||| | | |||||||||| ||| || || | |
Sbjct 28956 GATGAGACGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATCTTGGCCTTCACATT 28897
Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | ||||| |||||| || |||| || ||||| ||||| || || ||||| ||
Sbjct 28896 GTCGATGGTGTCCGACGATTCGACTTCGAGGGTAATGGTCTTGCCAGTGAGAGTCTTGAC 28837
Query 43172 AAAGATTTGCAT 43183
||||| |||||
Sbjct 28836 GAAGATCTGCAT 28825
Score = 102 bits (112), Expect = 9e-17
Identities = 135/182 (74%), Gaps = 4/182 (2%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || |||||||| | || || || |||| || |||||||| || || ||
Sbjct 28507 CTCCTTCTGGATGTTGTAATCCGAGAGGGTACGACCGTCCTCGAGCTGCTTTCCGGCAAA 28448
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110
||||| ||||||||||||| ||| | || |||||||||| ||| | || | |||| ||
Sbjct 28447 GATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC-TGAATCTTGGCCTTGA-CG 28390
Query 43111 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169
| | | | ||||| || || || || | |||||||| |||||||| || |||||
Sbjct 28389 TTGTCGATGGTGTCCGAAGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGAGTCTTG 28330
Query 43170 AC 43171
||
Sbjct 28329 AC 28328
Score = 87.8 bits (96), Expect = 2e-12
Identities = 124/172 (72%), Gaps = 2/172 (1%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || | || || || |||| || |||||||| || || ||
Sbjct 28788 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAA 28729
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
||||| ||||||||||||| ||| | || |||||||||| ||| || |||| |||
Sbjct 28728 GATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 28670
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAG 43162
| | | ||||| || || || || | ||||| |||||||| || ||
Sbjct 28669 TGTCGATGGTGTCCGAAGACTCAACCTCAAGAGTGATCGTTTTGCCGGTAAG 28618
>seq2
Length=3730214
Score = 107 bits (118), Expect = 2e-18
Identities = 134/181 (74%), Gaps = 2/181 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || | || || || | || || |||||||| || |||||
Sbjct 3658312 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 3658371
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
||||| ||||||||||||| || | || |||||||||| ||| || |||| |||
Sbjct 3658372 GATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 3658430
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | |||||| ||| ||||| |||| ||||| || |||||||| || ||||| |
Sbjct 3658431 TGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGA 3658490
Query 43171 C 43171
|
Sbjct 3658491 C 3658491
>seq1
Length=4014173
Score = 87.8 bits (96), Expect = 2e-12
Identities = 121/167 (72%), Gaps = 2/167 (1%)
Strand=Plus/Minus
Query 43006 TGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCT 43065
|||| || | || || || |||| || |||||||| || ||||| || || |||||||
Sbjct 637235 TGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCT 637176
Query 43066 GGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCG 43124
|||| | || | || |||||||||| ||| || |||| ||| | | | ||||||
Sbjct 637175 GGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGTTGTCGATCGTGTCC 637117
Query 43125 CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
||| || || |||| |||||||| ||||| || || ||||| ||
Sbjct 637116 GACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAAC 637070
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571817399863840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |