Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq11 113 5e-20 seq2 107 2e-18 seq1 87.8 2e-12 >seq11 Length=562504 Score = 113 bits (124), Expect = 5e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 ||||| || |||||| ||||| ||||| || | ||||| || |||| || |||||| Sbjct 29483 TGCAACGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGCTGC 29424 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 || || ||||| ||||| ||||||||||||| || | || |||||||||| ||| | || Sbjct 29423 TTGCCCGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC-TGAATCTT 29365 Query 43101 TGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159 | | ||| | | | |||||| ||| || || || | ||||| || ||||| || Sbjct 29364 CGCCTTCACGTTGTCGATAGTGTCGGACGACTCAACTTCAAGAGTGATAGTCTTGCCAGT 29305 Query 43160 TAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || || || ||||| Sbjct 29304 GAGGGTCTTGACGAAAATCTGCAT 29281 Score = 109 bits (120), Expect = 6e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 42986 TGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACC 43045 |||| ||||||||| || ||||| || | || || || |||| || |||||||| || Sbjct 29250 TGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGGGTACGACCGTCTTCAAGCTGCTTGCC 29191 Query 43046 AGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTT 43105 || || ||||| ||||||||||||| || | | |||||||||| ||| | || | | Sbjct 29190 GGCAAAGATGAGACGCTGCTGGTCGGGAGGAATACCCTCCTTGTCC-TGAATCTTCGCCT 29132 Query 43106 GAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCG 43164 ||| | | | |||||| ||| || || |||| || ||||| ||||| || || | Sbjct 29131 TCACGTTGTCGATAGTGTCGGACGACTCGACCTCGAGGGTAATGGTCTTGCCTGTGAGAG 29072 Query 43165 TCTTTACAAAGATTTGCAT 43183 |||| || ||||| ||||| Sbjct 29071 TCTTGACGAAGATCTGCAT 29053 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| |||| || || || |||| || |||||||| || || || Sbjct 29016 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAA 28957 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||||| ||| | | |||||||||| ||| || || | | Sbjct 28956 GATGAGACGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATCTTGGCCTTCACATT 28897 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| |||||| || |||| || ||||| ||||| || || ||||| || Sbjct 28896 GTCGATGGTGTCCGACGATTCGACTTCGAGGGTAATGGTCTTGCCAGTGAGAGTCTTGAC 28837 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 28836 GAAGATCTGCAT 28825 Score = 102 bits (112), Expect = 9e-17 Identities = 135/182 (74%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||| | || || || |||| || |||||||| || || || Sbjct 28507 CTCCTTCTGGATGTTGTAATCCGAGAGGGTACGACCGTCCTCGAGCTGCTTTCCGGCAAA 28448 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||| ||||||||||||| ||| | || |||||||||| ||| | || | |||| || Sbjct 28447 GATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC-TGAATCTTGGCCTTGA-CG 28390 Query 43111 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | | | ||||| || || || || | |||||||| |||||||| || ||||| Sbjct 28389 TTGTCGATGGTGTCCGAAGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGAGTCTTG 28330 Query 43170 AC 43171 || Sbjct 28329 AC 28328 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || |||| || |||||||| || || || Sbjct 28788 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAA 28729 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||||| ||| | || |||||||||| ||| || |||| ||| Sbjct 28728 GATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 28670 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAG 43162 | | | ||||| || || || || | ||||| |||||||| || || Sbjct 28669 TGTCGATGGTGTCCGAAGACTCAACCTCAAGAGTGATCGTTTTGCCGGTAAG 28618 >seq2 Length=3730214 Score = 107 bits (118), Expect = 2e-18 Identities = 134/181 (74%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || | || || |||||||| || ||||| Sbjct 3658312 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 3658371 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||||| || | || |||||||||| ||| || |||| ||| Sbjct 3658372 GATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 3658430 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| ||| ||||| |||| ||||| || |||||||| || ||||| | Sbjct 3658431 TGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGA 3658490 Query 43171 C 43171 | Sbjct 3658491 C 3658491 >seq1 Length=4014173 Score = 87.8 bits (96), Expect = 2e-12 Identities = 121/167 (72%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 43006 TGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCT 43065 |||| || | || || || |||| || |||||||| || ||||| || || ||||||| Sbjct 637235 TGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCT 637176 Query 43066 GGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCG 43124 |||| | || | || |||||||||| ||| || |||| ||| | | | |||||| Sbjct 637175 GGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGTTGTCGATCGTGTCC 637117 Query 43125 CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 ||| || || |||| |||||||| ||||| || || ||||| || Sbjct 637116 GACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAAC 637070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817399863840