Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1 179 8e-40 seq2 86.0 1e-11 >seq1 Length=4014173 Score = 179 bits (198), Expect = 8e-40 Identities = 602/925 (65%), Gaps = 28/925 (3%) Strand=Plus/Minus Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877 ||| | | ||| | |||||| || || ||| || |||||| | ||||| |||||| Sbjct 2027151 TACAACTACTTCGGTTTCAAGACCCTCGAGCGCTCATATCTCTTGCGCATTGACGGCAAG 2027092 Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937 | | || || ||||||||| | ||||| || | |||| || ||| || || Sbjct 2027091 GTGGCCGAGCGTCCGCAGCACATGATTATGCGTGTTTCCATCGGTATCCACGGTGACAAC 2027032 Query 248938 ATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACA 248997 || || | || | |||||||||| | ||| || |||| | || || || | Sbjct 2027031 ATCGACAAGGTCATTGAGACGTACAACCTCATGTCCGAGCGCTACTTCACTCACGCTTCC 2026972 Query 248998 CCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCC 249057 ||||| ||||||||||| ||||| | || |||| || || ||||| || | || Sbjct 2026971 CCGACCCTCTTCAACGCTGGTACTCCCCACCCTCAGATGTCGTCATGCTTCCTCGTCGCT 2026912 Query 249058 ATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAA-ACAGACGGCGAAGATTTC 249116 ||| | |||||||| |||||||||| || ||||| || || || | || |||| || Sbjct 2026911 ATGAAGGACGACTCGATCGACGGCATCTACGACACCCTCAAGACTTGC-GCCCAGATCTC 2026853 Query 249117 TAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACAT 249176 || || || || || |||||| | | |||||| || || ||||| |||||||| Sbjct 2026852 CAAGACTGCTGGTGGCATTGGTCTCCACATTCACAACATTCGTGCCAAGGGCTCGTACAT 2026793 Query 249177 CAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCAC 249236 || || || || | | |||||||| ||| | || || || || | || Sbjct 2026792 TGCTGGAACCAACGGTTACTCCAACGGTATCGTCCCCATGCTCCGTGCCTACGACGCGAC 2026733 Query 249237 CGCCAGGTTCATCAACCAGGCCGG------GCGCCGAAAGGGGTCGTTCGCCATGTATTT 249290 |||| | | | | |||||| || ||||| || | || ||||| || | Sbjct 2026732 CGCCCGTTACGTTGACCAGGGTGGCAACAAGCGCC---CTGGTGCCTTTGCCATCTACCT 2026676 Query 249291 GGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGA 249350 || ||||| || ||| | || || ||||| ||| | |||||| ||||||| || Sbjct 2026675 TGAGCCCTGGCATGCGGATGTTTTCGACTTCCTTGACCTCCGCAAGAACCACGGCAAGGA 2026616 Query 249351 GCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCG 249410 | | | |||||||| || ||||||| || |||||| | ||| | |||||| || Sbjct 2026615 GGAGGTTCGCGCGCGTGATCTGTTCTACGCTCTCTGGGTCCCTGACCTCTTCATGAAGCG 2026556 Query 249411 CGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGA-CGCCCCGGACCT--CAT 249467 ||| |||||||||| || ||||| || | | || |||| |||| || | | | Sbjct 2026555 TGTCGAGGCCGACGGTGACTGGACCCTCATGTGCCCCGCCGAGTGCCCTGGTCTTGCCGA 2026496 Query 249468 CGATCTACACGGCGCCGACTTCGACCAAGCCTATAAGAAATACGAATCCAACGGCATCG- 249526 || || || ||| | | | |||| | || |||| ||||| | |||| | Sbjct 2026495 CGTTC-ACTCGGAGAAGTTTGAGACCCTG--TACCAGAAGTACGAGCGTGAGGGCAAGGG 2026439 Query 249527 --GCAAGACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTGGAGTCCCAGATAGA 249581 ||||||| |||||||| | || || ||||| | | | ||| |||||| || Sbjct 2026438 TCGCAAGACCATCAAGGCCCAGAAGCTCTGGTTTGCCA---TTCTTGAGGCCCAGACCGA 2026382 Query 249582 GACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAGTAACCAACGGC 249640 ||| || || || | | || | | ||| || || |||| |||| |||||| | || Sbjct 2026381 GACTGGTGGCCCCT-TCATCCTCTACAAGGATGCTGCCAACCGCAAGTCTAACCAGCAGC 2026323 Query 249641 ATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAATACTCGTCCAAGG 249700 | || || || ||| ||||| || ||||| | ||| | || | ||||| || | Sbjct 2026322 ACCTGGGCACTATCAAGTCGTCCAACCTCTGCACTGAGATCATCGAGTACTCTTCTCCCG 2026263 Query 249701 AGGAGATTGCCGTCTGCAACCTGGC 249725 | ||| |||||||||||||||| || Sbjct 2026262 ACGAGGTTGCCGTCTGCAACCTTGC 2026238 >seq2 Length=3730214 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 254031 GGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAACCCTGTTGGGCGAGGGGAAC 254090 ||||| || |||||||| || ||||| ||||| || || | |||| ||| | | || Sbjct 3541469 GGAACCGGAAAGACGTCTACGATCCTCGCGCTCGCGCGCAGGCTGTACGGCCCCGCGTAC 3541410 Query 254091 ATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGC 254150 || ||| | | |||||||||||||| || ||||| ||||| | || ||||||||| Sbjct 3541409 C---GAAAGCACATTCTCGAGCTGAACGCGTCCGACGACCGCGGCATTGATGTCGTCCGC 3541353 Query 254151 GACAAGATCAAGA-CTTT 254167 || ||||||||| |||| Sbjct 3541352 GAGCAGATCAAGAGCTTT 3541335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766014786304