Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq11 95.1 1e-14 >seq11 Length=562504 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||| || || ||| |||| || || || |||||||| || Sbjct 28507 CTCCTTCTGGATGTTGTAATCCGAGAGGGTACGACCGTCCTCGAGCTGCTTTCCGGCAAA 28448 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| |||||||| || | |||||||||||| ||| || ||| || Sbjct 28447 GATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTT 28388 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | ||||| | ||| ||||| | ||| || ||||||||||| |||||||| || Sbjct 28387 GTCGATGGTGTCCGAAGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGAGTCTTGAC 28328 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || || |||| || || || || ||||| || Sbjct 29016 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAA 28957 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| |||||||| || | ||||||||||||| || || ||| || Sbjct 28956 GATGAGACGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATCTTGGCCTTCACATT 28897 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | ||||| || || || | |||||| |||||||| || |||||||| || Sbjct 28896 GTCGATGGTGTCCGACGATTCGACTTCGAGGGTAATGGTCTTGCCAGTGAGAGTCTTGAC 28837 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 28836 GAAGATCTGCAT 28825 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||||| ||| |||||||||||||||||||||| || ||| |||| || || || Sbjct 29484 GTGCAACGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGCTG 29425 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| || | ||||| |||||||| || | |||||||||||| ||| || Sbjct 29424 CTTGCCCGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTT 29365 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | |||| ||| || || | || || |||||||| || Sbjct 29364 CGCCTTCACGTTGTCGATAGTGTCGGACGACTCAACTTCAAGAGTGATAGTCTTGCCAGT 29305 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || || || ||||| Sbjct 29304 GAGGGTCTTGACGAAAATCTGCAT 29281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395075065180588