Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1 311 8e-80 seq11 168 6e-37 seq2 87.8 2e-12 >seq1 Length=4014173 Score = 311 bits (344), Expect = 8e-80 Identities = 638/943 (68%), Gaps = 4/943 (0%) Strand=Plus/Plus Query 23020 GGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTC 23079 ||| || |||||||| ||||| ||||| |||||||| || | |||||| | || || Sbjct 2026228 GGCAATGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAGAGTACTCGATGATCTC 2026287 Query 23080 GGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCT-CTGGTTGCTTTTTCGATTGC 23138 || || || ||| |||| || ||||||| | ||| |||||| || || ||| Sbjct 2026288 AGTGCAGAGGTTGGACGACTTGATAGTGCCCAGGT-GCTGCTGGTTAGACTTGCGGTTGG 2026346 Query 23139 ACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTC 23198 | |||||||||||| ||| | || || |||||| ||| | ||| | || || Sbjct 2026347 CAGCATCCTTGTAGAGGATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCAAGAATGGCAA 2026406 Query 23199 GCCACATAGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGG 23257 ||| | |||| || | | ||| || ||| ||| || ||||||||| ||| Sbjct 2026407 ACCAGAGCTTCTGGGCCTTGATG-GTCTTGCGACCCTTGCCCTCACGCTCGTACTTCTGG 2026465 Query 23258 TACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACAC 23317 |||| | ||||| | | || | |||||| || || || | | || ||| Sbjct 2026466 TACAGGGTCTCAAACTTCTCCGAGTGAACGTCGGCAAGACCAGGGCACTCGGCGGGGCAC 2026525 Query 23318 ATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGA 23377 ||||| |||| ||| || || || |||| || || || || | ||| ||| Sbjct 2026526 ATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCAGGGACCCAGAGA 2026585 Query 23378 GCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAA 23437 ||||||||||| || || ||||| |||||||| |||||| |||||| | || | Sbjct 2026586 GCGTAGAACAGATCACGCGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCAAGG 2026645 Query 23438 AAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTA 23497 ||||| || || ||||||||||| ||||| ||||| | |||||| || || || | ||| Sbjct 2026646 AAGTCGAAAACATCCGCATGCCAGGGCTCAAGGTAGATGGCAAAGGCACCAGGGCGCTTG 2026705 Query 23498 TTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGA 23557 ||||| ||||| || ||||||||||| || || ||| | | ||||| || |||| | Sbjct 2026706 TTGCCACCCTGGTCAACGTAACGGGCGGTCGCGTCGTAGGCACGGAGCATGGGGACGATA 2026765 Query 23558 CCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACG 23617 |||||||| ||| || || | ||| || || || |||| |||||||| | Sbjct 2026766 CCGTTGGAGTAACCGTTGGTTCCAGCAATGTACGAGCCCTTGGCACGAATGTTGTGAATG 2026825 Query 23618 TGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAG 23677 |||| ||| ||||| || | | || || ||| ||||| || || ||||||||| Sbjct 2026826 TGGAGACCAATGCCACCAGCAGTCTTGGAGATCTGGGCGCAAGTCTTGAGGGTGTCGTAG 2026885 Query 23678 ATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTG 23737 ||||| ||||| ||| || || | ||||| | ||| || || ||||| || | | | Sbjct 2026886 ATGCCGTCGATCGAGTCGTCCTTCATAGCGACGAGGAAGCATGACGACATCTGAGGGTGG 2026945 Query 23738 GGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGA 23797 || ||| | || ||| || |||||| ||||| || ||||| | | ||||| || Sbjct 2026946 GGAGTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGAGTGAAGTAGCGCTCGGACATGAGG 2027005 Query 23798 TTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATC 23857 |||||||| || ||| | || |||| || ||||| |||||||||| || ||||| Sbjct 2027006 TTGTACGTCTCAATGACCTTGTCGATGTTGTCACCGTGGATACCGATGGAAACACGCATA 2027065 Query 23858 ATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGC 23917 ||||||| || || | |||| || ||||| ||| || |||||||| || | Sbjct 2027066 ATCATGTGCTGCGGACGCTCGGCCACCTTGCCGTCAATGCGCAAGAGATATGAGCGCTCG 2027125 Query 23918 ATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGT 23960 | || || || || || |||| ||| ||||| || |||| Sbjct 2027126 AGGGTCTTGAAACCGAAGTAGTTGTAGGCGAAGTCGCGGTCGT 2027168 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 31205 GTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAA 31264 || ||||| || || ||||| || |||||| |||| || || |||| |||| |||| Sbjct 637070 GTTAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGACACGATCGAC 637129 Query 31265 ACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATA 31324 | ||||| || || ||||||||| ||| | || || |||||||||||||| || Sbjct 637130 AACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGTCTTATC 637189 Query 31325 TTCGCTGGCAAACAGTTGGAAGAC 31348 ||||| ||||| ||| | || ||| Sbjct 637190 TTCGCCGGCAAGCAGCTCGAGGAC 637213 >seq11 Length=562504 Score = 168 bits (186), Expect = 6e-37 Identities = 352/520 (68%), Gaps = 16/520 (3%) Strand=Plus/Plus Query 57879 CTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAA 57938 || ||||| || ||||| || || ||| ||| |||||||| || ||| | || Sbjct 36747 CTCTTCAAGGCCATCGAGACCATCCCCTGCATCAAGAAGAAGGCCGACTGGGCGCTCCGT 36806 Query 57939 TGGATA----AAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGT 57994 ||||| | ||||| || || || || ||| | || || |||||||||||||| Sbjct 36807 TGGATTTCCGACGAGCGCT-CGTCC---TTTGCTGAGCGCCTCATTGCGTTCGCCGCCGT 36862 Query 57995 CGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCT 58054 ||||||||| || || || ||| ||||| | || || ||| | ||||| || ||||| Sbjct 36863 CGAAGGTATCTTTTTCTCTGGCTCGTTTGCCTCGATCTTCTGGCTCAAGAAGCGTGGCCT 36922 Query 58055 GATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGA 58114 ||||||||||| || || ||||||| | || ||||| ||||||||||| || || || Sbjct 36923 CATGCCCGGCCTCACTTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTTCACACCGA 36982 Query 58115 TTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGA 58174 ||||| || || | | | | || | | | ||| | | | ||| | | Sbjct 36983 CTTTGCCTGTCTGCTTTTCACCCATCTCCGCCGTCGCCCGCACCCCAACCTCATTGAGAA 37042 Query 58175 CATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGC 58234 |||||| |||||| ||| ||| ||| | ||||| | ||||| || || || ||| | Sbjct 37043 GATTATCCGCGAGGCCGTCAAGATTGAACAGGAGTTCCTTACCGAGGCGCTCCCCGTGTC 37102 Query 58235 CATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACT 58294 | ||||||||||| || | | |||| | ||||||||||| || |||||| | | Sbjct 37103 GCTCATCGGTATGAACGCTGGTCTCATGTGCCAATACATTGAGTTCGTCGCCGACCGCC- 37161 Query 58295 TTTGCTCGAACTGATTGGAGAGCGTCA----TTACAACACGAAAAATCCGTTTGATTTTA 58350 |||||| |||| | || || |||||| ||| || || || || |||| Sbjct 37162 --TGCTCGTCGCCCTTGG-CAACGACAAGATCTACAACTCGACGAACCCCTTCGACTTTA 37218 Query 58351 TGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGA 58390 || | ||||||| || | |||||| | ||||| ||||| Sbjct 37219 TGGAGATGATCTCTCTGCAAGGCAAGGCCAACTTCTTCGA 37258 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| |||||||| || || ||| |||| || || ||||| Sbjct 29053 ATGCAGATCTTCGTCAAGACTCTCACAGGCAAGACCATTACCCTCGAGGTCGAGTCGTCC 29112 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | || || || || ||||||||| || | || ||||||||| Sbjct 29113 GACACTATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCAG 29172 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || || ||||| ||| | |||||| | || | || || ||| Sbjct 29173 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAAGACGGTCGTACCCTCTCGGACTACAAC 29232 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || || || ||||| || || || | ||| | || |||| Sbjct 29233 ATCCAAAAGGAGTCCACACTTCACCTCGTTCTCCGCCTGCGTGGTGGTA 29281 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || ||||| || ||||| | || ||||| ||||| Sbjct 29281 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACTATCACTCTTGAAGTTGAGTCGTCC 29340 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | || || || || ||||||||| ||| | || ||||||||| Sbjct 29341 GACACTATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAG 29400 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| ||||| ||| | || ||| ||| | ||| || ||| Sbjct 29401 CAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCCGACTACAAC 29460 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||| || || ||||| | || || || ||| Sbjct 29461 ATTCAGAAGGAGTCGACGTTGCACCTTGTTCTT 29493 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || ||||| || || ||| |||| || ||| |||| Sbjct 28825 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATTACCCTCGAAGTCGAATCGTCG 28884 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || ||||||||| || | |||||||||||| Sbjct 28885 GACACCATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCGCCCGACCAG 28944 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || || ||||| ||| | || ||| || | || || ||| Sbjct 28945 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCTGACTACAAC 29004 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || ||||| |||||||| || || Sbjct 29005 ATCCAGAAGGAGTCGACCCTTCATCTTGTCCT 29036 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 31205 GTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAA 31264 || |||||||| || ||||| || |||||| | || || || | || |||| |||| Sbjct 28328 GTCAAGACTCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCTTCGGACACCATCGAC 28387 Query 31265 ACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATA 31324 | ||||| | || ||||||||| ||| | |||||||||||||||||||| || Sbjct 28388 AACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGTCTCATC 28447 Query 31325 TTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAA 31384 || || || || ||| | || ||| | || | ||||| ||||| || || || Sbjct 28448 TTTGCCGGAAAGCAGCTCGAGGACGGTCGTACCCTCTCGGATTACAACATCCAGAAGGAG 28507 Query 31385 TCGACTCTTCATCTGGTACT 31404 ||||| |||||||| || || Sbjct 28508 TCGACCCTTCATCTCGTTCT 28527 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 31214 CTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAA 31273 || || |||||||||||||| | || ||||| | || |||| |||| | ||||| Sbjct 28618 CTTACCGGCAAAACGATCACTCTTGAGGTTGAGTCTTCGGACACCATCGACAACGTCAAG 28677 Query 31274 CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGC 31333 | || ||||||||| ||| | |||||||||||||||||||| || || || ||| Sbjct 28678 GCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGTCTCATCTTTGCCGGC 28737 Query 31334 AAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTT 31393 || ||| | || ||| | || | || || ||||| || || || ||||| ||| Sbjct 28738 AAGCAGCTCGAGGACGGTCGTACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTT 28797 Query 31394 CATCTGGTACT 31404 ||||| || || Sbjct 28798 CATCTTGTCCT 28808 >seq2 Length=3730214 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 31205 GTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAA 31264 || ||||| || || ||||| || |||||| |||| || || ||||||||| |||| Sbjct 3658491 GTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCCGACACCATCGAC 3658432 Query 31265 ACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATA 31324 | ||||| | || ||||||||| ||| | || |||||||||||||| || || Sbjct 3658431 AACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTCATC 3658372 Query 31325 TTCGCTGGCAAACAGTTGGAAGA 31347 ||||| ||||| ||| | || || Sbjct 3658371 TTCGCCGGCAAGCAGCTCGAGGA 3658349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766243981760