Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03-
01] 28 sequences; 24,510,922 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq11 120 4e-22
seq1 98.7 1e-15
seq3 91.5 2e-13
>seq11
Length=562504
Score = 120 bits (132), Expect = 4e-22
Identities = 179/252 (71%), Gaps = 3/252 (1%)
Strand=Plus/Minus
Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637
|| ||| || || ||| ||| ||||||||||| | || | ||||| || || ||
Sbjct 36995 CAGACAGGCAAAGTCGGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGT 36936
Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697
||| |||||||| ||||||||||| || ||||| || || || || || || || || ||
Sbjct 36935 GAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAA 36876
Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCGCT-GTC 33754
||||| ||||| || || || || ||||| || | ||| || | || ||||| |||
Sbjct 36875 AAAGATACCTTCGACGGCGGCGAACGCAATGAGGCGCTCAGCAAAGGACGAGCGCTCGTC 36816
Query 33755 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814
||||| | ||||| ||||||||||| || | || || || || || |||||
Sbjct 36815 GGAAATCCAACGGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGC 36756
Query 33815 ATTAAAGAGATA 33826
|| ||||| ||
Sbjct 36755 CTTGAAGAGGTA 36744
>seq1
Length=4014173
Score = 98.7 bits (108), Expect = 1e-15
Identities = 426/671 (63%), Gaps = 2/671 (0%)
Strand=Plus/Plus
Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280
||| || || | || ||||| | | ||| || ||||| ||| || || ||||| ||
Sbjct 2026507 AGGGCACTCGGCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAA 2026566
Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340
||| ||||| | ||| ||||| || ||||| | | | | ||||| || ||
Sbjct 2026567 GAGGTCAGGGACCCAGAGAGCGTAGAACAGATCACGCGCGCGAACCTCCTCCTTGCCGTG 2026626
Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400
||||| || || ||||| | | || ||| | |||||| || || | ||| |||||
Sbjct 2026627 GTTCTTGCGGAGGTCAAGGAAGTCGAAAACATCCGCATGCCAGGGCTCAAGGTAGATGGC 2026686
Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460
| | ||||| || ||||| || ||||| || | ||| | ||||| | || |
Sbjct 2026687 AAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCAACGTAACGGGCGGTCGCGTCGTAGGC 2026746
Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520
| | ||| || | |||||||| || ||| ||||| || | || || || |
Sbjct 2026747 ACGGAGCATGGGGACGATACCGTTGGAGTAACCGTTGGTTCCAGCAATGTACGAGCCCTT 2026806
Query 63521 GGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63580
||||||||| || ||| ||||| || || || || | || ||||| |||||
Sbjct 2026807 GGCACGAATGTTGTGAATGTGGAGACCAATGCCACCAGCAGTCTTGGAGATCTGGGCGCA 2026866
Query 63581 TCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACA 63640
|| | ||||| |||||||| || || || || |||| | || || ||
Sbjct 2026867 AGTCTTGAGGGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATAGCGACGAGGAAGCA 2026926
Query 63641 GCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63700
||||| || | | | ||| || || || || | ||| || |||||||| || ||
Sbjct 2026927 TGACGACATCTGAGGGTGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGAGTGAA 2026986
Query 63701 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTAT-ATCCCATTGATGAA 63759
| || || | || |||||||||||||| | ||| || | || | || |
Sbjct 2026987 GTAGCGCTCGGACATGAGGTTGTACGTCTCAATGACCTTGTCGATGTTGTCACCG-TGGA 2027045
Query 63760 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTT 63819
| || | | |||||||| | ||||||||| || | || | | ||| || ||
Sbjct 2027046 TACCGATGGAAACACGCATAATCATGTGCTGCGGACGCTCGGCCACCTTGCCGTCAATGC 2027105
Query 63820 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 63879
||| | || || || | || || ||||| || |||||||| | ||||| || |
Sbjct 2027106 GCAAGAGATATGAGCGCTCGAGGGTCTTGAAACCGAAGTAGTTGTAGGCGAAGTCGCGGT 2027165
Query 63880 CGTAAATAATA 63890
|||| || |||
Sbjct 2027166 CGTAGATTATA 2027176
>seq3
Length=3725192
Score = 91.5 bits (100), Expect = 2e-13
Identities = 150/210 (71%), Gaps = 6/210 (3%)
Strand=Plus/Minus
Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641
|| || || ||| ||| |||||||| |||| | || | || || || || || ||
Sbjct 3008273 CACGCAAAGTCGGTGTGAAGACCCTCATCTCGAGAGATGAGCTCATTCGAGAATGTAAGG 3008214
Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701
|| |||| || || |||||||| ||||| || |||| ||| |||||||| || ||||||
Sbjct 3008213 CCACGCATGAGACCGCGCTTTTTGAGCCAGAAGATGGCAGCAAATGATCCCGAGAAGAAG 3008154
Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT--GT- 33758
|| || || || |||||||| || ||||| | | ||| ||| |||| | ||
Sbjct 3008153 ATGCCCTCCACACATGCAAAGGCGATCAGTCTGG-TGCGGAAC-GGCA-TGTCGTCCGTG 3008097
Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTT 33788
|| |||| | ||||| ||||||||||||
Sbjct 3008096 ATGTACTTGAGTGCCCAGTCGGCCTTCTTT 3008067
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629817379563840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |