Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03-
01] 28 sequences; 24,510,922 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq11 138 2e-27
seq1 95.1 2e-14
seq3 87.8 3e-12
>seq11
Length=562504
Score = 138 bits (152), Expect = 2e-27
Identities = 183/252 (73%), Gaps = 3/252 (1%)
Strand=Plus/Minus
Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015
|| ||| || || ||| ||| ||||||||||| | || || |||||||| || ||
Sbjct 36995 CAGACAGGCAAAGTCGGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGT 36936
Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAA 50075
||| |||||||| ||||||||||| || ||||| || || || ||||| || ||||| ||
Sbjct 36935 GAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAA 36876
Query 50076 GAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA--ACTGGCGCT-GTC 50132
||||| ||||| || ||||| || |||| || | ||| || | || ||||| |||
Sbjct 36875 AAAGATACCTTCGACGGCGGCGAACGCAATGAGGCGCTCAGCAAAGGACGAGCGCTCGTC 36816
Query 50133 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192
||||| | ||||| ||||||||||| || | || || || || || |||||
Sbjct 36815 GGAAATCCAACGGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGC 36756
Query 50193 ATTAAAGAGATA 50204
|| ||||| ||
Sbjct 36755 CTTGAAGAGGTA 36744
>seq1
Length=4014173
Score = 95.1 bits (104), Expect = 2e-14
Identities = 434/686 (63%), Gaps = 2/686 (0%)
Strand=Plus/Plus
Query 79878 AACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTT 79937
||| ||| | | ||||| || ||| | || ||||| | | ||| || || || |||
Sbjct 2026492 AACGTCGGCAAGACCAGGGCACTCGGCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTC 2026551
Query 79938 TACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 79997
|| || ||||| ||||| ||||| | ||| ||||| || ||||| | | | |
Sbjct 2026552 GACACGCTTCATGAAGAGGTCAGGGACCCAGAGAGCGTAGAACAGATCACGCGCGCGAAC 2026611
Query 79998 CTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 80057
|||||| || || ||||| || || ||||| | | || ||| | |||||| ||
Sbjct 2026612 CTCCTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAAGTCGAAAACATCCGCATGCCAGGG 2026671
Query 80058 TTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 80117
|| | ||| ||||| | | || || || ||||| || ||||| || | ||| | ||
Sbjct 2026672 CTCAAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCAACGTAACGGGC 2026731
Query 80118 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGA 80177
||| | || | | | ||| || | ||||| ||||| ||| ||||| || |
Sbjct 2026732 GGTCGCGTCGTAGGCACGGAGCATGGGGACGATACCGTTGGAGTAACCGTTGGTTCCAGC 2026791
Query 80178 GATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTT 80237
|| || || |||||||||| || ||| ||||| || || || || | ||
Sbjct 2026792 AATGTACGAGCCCTTGGCACGAATGTTGTGAATGTGGAGACCAATGCCACCAGCAGTCTT 2026851
Query 80238 AGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCAT 80297
||||| ||||| || | || || |||||||| || || || || ||||
Sbjct 2026852 GGAGATCTGGGCGCAAGTCTTGAGGGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCAT 2026911
Query 80298 GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGG 80357
| || || || ||||| || | | ||| || || || || | ||| ||
Sbjct 2026912 AGCGACGAGGAAGCATGACGACATCTGAGGGTGGGGAGTACCAGCGTTGAAGAGGGTCGG 2026971
Query 80358 AGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTAT 80417
|||||||| || || | || |||| || |||||||||||||| | || ||
Sbjct 2026972 GGAAGCGTGAGTGAAGTAGCGCTCGGACATGAGGTTGTACGTCTCAATGACCTTGTCGAT 2027031
Query 80418 -ATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGA 80476
| || | || || || | | |||||||| | ||||||||| || | || | |
Sbjct 2027032 GTTGTCACCG-TGGATACCGATGGAAACACGCATAATCATGTGCTGCGGACGCTCGGCCA 2027090
Query 80477 TCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT 80536
|||| | || ||| | || || || | || || ||||| || |||||||
Sbjct 2027091 CCTTGCCGTCAATGCGCAAGAGATATGAGCGCTCGAGGGTCTTGAAACCGAAGTAGTTGT 2027150
Query 80537 ATGAAAAGTCTCGTTCGTAAATAATA 80562
| | ||||| || ||||| || |||
Sbjct 2027151 AGGCGAAGTCGCGGTCGTAGATTATA 2027176
>seq3
Length=3725192
Score = 87.8 bits (96), Expect = 3e-12
Identities = 149/210 (71%), Gaps = 6/210 (3%)
Strand=Plus/Minus
Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019
|| || || ||| ||| |||||||| |||| | || || || || || || || ||
Sbjct 3008273 CACGCAAAGTCGGTGTGAAGACCCTCATCTCGAGAGATGAGCTCATTCGAGAATGTAAGG 3008214
Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079
|| |||| || || |||||||| ||||| || |||| |||||||| || || ||||||
Sbjct 3008213 CCACGCATGAGACCGCGCTTTTTGAGCCAGAAGATGGCAGCAAATGATCCCGAGAAGAAG 3008154
Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCAT--GT- 50136
|| || || || |||||||| | ||||| | | ||| ||| |||| | ||
Sbjct 3008153 ATGCCCTCCACACATGCAAAGGCGATCAGTCTGG-TGCGGAAC-GGCA-TGTCGTCCGTG 3008097
Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTT 50166
|| |||| | ||||| ||||||||||||
Sbjct 3008096 ATGTACTTGAGTGCCCAGTCGGCCTTCTTT 3008067
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718268548605920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |