Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq11 138 2e-27 seq1 95.1 2e-14 seq3 87.8 3e-12 >seq11 Length=562504 Score = 138 bits (152), Expect = 2e-27 Identities = 183/252 (73%), Gaps = 3/252 (1%) Strand=Plus/Minus Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015 || ||| || || ||| ||| ||||||||||| | || || |||||||| || || Sbjct 36995 CAGACAGGCAAAGTCGGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGT 36936 Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAA 50075 ||| |||||||| ||||||||||| || ||||| || || || ||||| || ||||| || Sbjct 36935 GAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAA 36876 Query 50076 GAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA--ACTGGCGCT-GTC 50132 ||||| ||||| || ||||| || |||| || | ||| || | || ||||| ||| Sbjct 36875 AAAGATACCTTCGACGGCGGCGAACGCAATGAGGCGCTCAGCAAAGGACGAGCGCTCGTC 36816 Query 50133 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 ||||| | ||||| ||||||||||| || | || || || || || ||||| Sbjct 36815 GGAAATCCAACGGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGC 36756 Query 50193 ATTAAAGAGATA 50204 || ||||| || Sbjct 36755 CTTGAAGAGGTA 36744 >seq1 Length=4014173 Score = 95.1 bits (104), Expect = 2e-14 Identities = 434/686 (63%), Gaps = 2/686 (0%) Strand=Plus/Plus Query 79878 AACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTT 79937 ||| ||| | | ||||| || ||| | || ||||| | | ||| || || || ||| Sbjct 2026492 AACGTCGGCAAGACCAGGGCACTCGGCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTC 2026551 Query 79938 TACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 79997 || || ||||| ||||| ||||| | ||| ||||| || ||||| | | | | Sbjct 2026552 GACACGCTTCATGAAGAGGTCAGGGACCCAGAGAGCGTAGAACAGATCACGCGCGCGAAC 2026611 Query 79998 CTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 80057 |||||| || || ||||| || || ||||| | | || ||| | |||||| || Sbjct 2026612 CTCCTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAAGTCGAAAACATCCGCATGCCAGGG 2026671 Query 80058 TTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 80117 || | ||| ||||| | | || || || ||||| || ||||| || | ||| | || Sbjct 2026672 CTCAAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCAACGTAACGGGC 2026731 Query 80118 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGA 80177 ||| | || | | | ||| || | ||||| ||||| ||| ||||| || | Sbjct 2026732 GGTCGCGTCGTAGGCACGGAGCATGGGGACGATACCGTTGGAGTAACCGTTGGTTCCAGC 2026791 Query 80178 GATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTT 80237 || || || |||||||||| || ||| ||||| || || || || | || Sbjct 2026792 AATGTACGAGCCCTTGGCACGAATGTTGTGAATGTGGAGACCAATGCCACCAGCAGTCTT 2026851 Query 80238 AGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCAT 80297 ||||| ||||| || | || || |||||||| || || || || |||| Sbjct 2026852 GGAGATCTGGGCGCAAGTCTTGAGGGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCAT 2026911 Query 80298 GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGG 80357 | || || || ||||| || | | ||| || || || || | ||| || Sbjct 2026912 AGCGACGAGGAAGCATGACGACATCTGAGGGTGGGGAGTACCAGCGTTGAAGAGGGTCGG 2026971 Query 80358 AGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTAT 80417 |||||||| || || | || |||| || |||||||||||||| | || || Sbjct 2026972 GGAAGCGTGAGTGAAGTAGCGCTCGGACATGAGGTTGTACGTCTCAATGACCTTGTCGAT 2027031 Query 80418 -ATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGA 80476 | || | || || || | | |||||||| | ||||||||| || | || | | Sbjct 2027032 GTTGTCACCG-TGGATACCGATGGAAACACGCATAATCATGTGCTGCGGACGCTCGGCCA 2027090 Query 80477 TCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT 80536 |||| | || ||| | || || || | || || ||||| || ||||||| Sbjct 2027091 CCTTGCCGTCAATGCGCAAGAGATATGAGCGCTCGAGGGTCTTGAAACCGAAGTAGTTGT 2027150 Query 80537 ATGAAAAGTCTCGTTCGTAAATAATA 80562 | | ||||| || ||||| || ||| Sbjct 2027151 AGGCGAAGTCGCGGTCGTAGATTATA 2027176 >seq3 Length=3725192 Score = 87.8 bits (96), Expect = 3e-12 Identities = 149/210 (71%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||| ||| |||||||| |||| | || || || || || || || || Sbjct 3008273 CACGCAAAGTCGGTGTGAAGACCCTCATCTCGAGAGATGAGCTCATTCGAGAATGTAAGG 3008214 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || |||| || || |||||||| ||||| || |||| |||||||| || || |||||| Sbjct 3008213 CCACGCATGAGACCGCGCTTTTTGAGCCAGAAGATGGCAGCAAATGATCCCGAGAAGAAG 3008154 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCAT--GT- 50136 || || || || |||||||| | ||||| | | ||| ||| |||| | || Sbjct 3008153 ATGCCCTCCACACATGCAAAGGCGATCAGTCTGG-TGCGGAAC-GGCA-TGTCGTCCGTG 3008097 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTT 50166 || |||| | ||||| |||||||||||| Sbjct 3008096 ATGTACTTGAGTGCCCAGTCGGCCTTCTTT 3008067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268548605920