Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq11 123 3e-23 seq3 96.9 5e-15 seq1 86.0 8e-12 >seq11 Length=562504 Score = 123 bits (136), Expect = 3e-23 Identities = 180/252 (71%), Gaps = 3/252 (1%) Strand=Plus/Minus Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120 || ||| || || ||| ||| |||||||| || | || | |||||||| || || Sbjct 36995 CAGACAGGCAAAGTCGGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGT 36936 Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAA 42180 ||| |||||||| ||||||||||| || ||||| || || || ||||| || ||||| || Sbjct 36935 GAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAA 36876 Query 42181 GAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCACT-GTC 42237 ||||| ||||| || || || || ||||| || | ||| || | || || || ||| Sbjct 36875 AAAGATACCTTCGACGGCGGCGAACGCAATGAGGCGCTCAGCAAAGGACGAGCGCTCGTC 36816 Query 42238 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 ||||| | ||||| ||||||||||| || | || || || || || ||||| Sbjct 36815 GGAAATCCAACGGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGC 36756 Query 42298 ATTAAAGAGATA 42309 || ||||| || Sbjct 36755 CTTGAAGAGGTA 36744 >seq3 Length=3725192 Score = 96.9 bits (106), Expect = 5e-15 Identities = 151/210 (72%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || ||| ||| ||||||||||||| | || | || || || || || || Sbjct 3008273 CACGCAAAGTCGGTGTGAAGACCCTCATCTCGAGAGATGAGCTCATTCGAGAATGTAAGG 3008214 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 || |||| || || |||||||| ||||| || || | ||||||||||| || |||||| Sbjct 3008213 CCACGCATGAGACCGCGCTTTTTGAGCCAGAAGATGGCAGCAAATGATCCCGAGAAGAAG 3008154 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT--GT- 42241 || || || || |||||||| || ||||| | | || ||||| |||| | || Sbjct 3008153 ATGCCCTCCACACATGCAAAGGCGATCAGTCT-GGTGCGGAA-CGGCA-TGTCGTCCGTG 3008097 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTT 42271 || |||| | ||||| |||||||||||| Sbjct 3008096 ATGTACTTGAGTGCCCAGTCGGCCTTCTTT 3008067 >seq1 Length=4014173 Score = 86.0 bits (94), Expect = 8e-12 Identities = 319/500 (64%), Gaps = 0/500 (0%) Strand=Plus/Plus Query 71989 GGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATC 72048 || ||||| | | ||| || || || | | || || ||||| ||||| ||||| | | Sbjct 2026520 GGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCAGGGACC 2026579 Query 72049 CAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGA 72108 || ||||| || ||||| | | | | |||||| || || ||||| || Sbjct 2026580 CAGAGAGCGTAGAACAGATCACGCGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGG 2026639 Query 72109 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGC 72168 || ||||| | | || ||| | |||||| || || | ||| ||||| | | || || Sbjct 2026640 TCAAGGAAGTCGAAAACATCCGCATGCCAGGGCTCAAGGTAGATGGCAAAGGCACCAGGG 2026699 Query 72169 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 72228 || ||||| || ||||| || | ||| | ||||| | || | | | ||| || Sbjct 2026700 CGCTTGTTGCCACCCTGGTCAACGTAACGGGCGGTCGCGTCGTAGGCACGGAGCATGGGG 2026759 Query 72229 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTG 72288 | ||||| ||||| ||| ||||| || | || || || |||||||||| ||| Sbjct 2026760 ACGATACCGTTGGAGTAACCGTTGGTTCCAGCAATGTACGAGCCCTTGGCACGAATGTTG 2026819 Query 72289 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 72348 ||| ||||| || || || || | || ||||| ||||| || | || Sbjct 2026820 TGAATGTGGAGACCAATGCCACCAGCAGTCTTGGAGATCTGGGCGCAAGTCTTGAGGGTG 2026879 Query 72349 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGG 72408 || |||||||| || || || ||| |||| | || || || ||||| || Sbjct 2026880 TCGTAGATGCCGTCGATCGAGTCGTCCTTCATAGCGACGAGGAAGCATGACGACATCTGA 2026939 Query 72409 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAC 72468 | | ||| || || || || | ||| || |||||||| || || | || ||| Sbjct 2026940 GGGTGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGAGTGAAGTAGCGCTCGGAC 2026999 Query 72469 AGTAGATTGTACGTCTCAAT 72488 | || |||||||||||||| Sbjct 2027000 ATGAGGTTGTACGTCTCAAT 2027019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138965101280