Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03-
01] 28 sequences; 24,510,922 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq1 168 1e-36
seq11 118 2e-21
seq3 100 4e-16
>seq1
Length=4014173
Score = 168 bits (186), Expect = 1e-36
Identities = 366/536 (68%), Gaps = 14/536 (3%)
Strand=Plus/Minus
Query 96806 AACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACG 96865
||| ||||| || ||| || | || || |||||| | ||| | || | | ||
Sbjct 2026786 AACCAACGGTTACTCCAACGGTATCGTCCCCATGCTCCGTGCCTACGACGCGACCGCCCG 2026727
Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925
|||||| ||||| ||||| || || || || || | ||| ||||| | || || ||
Sbjct 2026726 TTACGTTGACCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCCATCTACCTTGAGCCCTG 2026667
Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985
||| ||||| ||||| ||||| | || | ||||| ||| ||| || |||| ||
Sbjct 2026666 GCATGCGGATGTTTTCGACTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCG 2026607
Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAA--- 97042
|| | || |||| || || |||||||| || || | ||||||||||| ||| |
Sbjct 2026606 CGCGCGTGATCTGTTCTACGCTCTCTGGGTCCCTGACCTCTTCATGAAGCGTGTCGAGGC 2026547
Query 97043 CGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTG 97102
|||||||| |||||| ||| |||||||||| | || || ||||| |||| | |
Sbjct 2026546 CGACGGTG---ACTGGACCCTCATGTGCCCCGCCGAGTGCCCTGGTCTTGCCGA-CGTTC 2026491
Query 97103 GGGCGAAG-AGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGA 97160
|| || |||||||| || |||| | ||||||| |||||| | || |||
Sbjct 2026490 ACTCGGAGAAGTTTGAGACCCTGTACCAGAAGTACGAGCGTGAGGGCAAGGGTCGCAAGA 2026431
Query 97161 CGAGTCGATGCACGAGAA-CTGTGGAAGGCCA-TCGTGACGGCTCAGGTAGAGACTGGAA 97218
| | || | || | |||| || ||| |||| || ||| ||| ||| ||||||||
Sbjct 2026430 CCA-TCAAGGC-CCAGAAGCTCTGGTTTGCCATTCTTGA-GGCCCAGACCGAGACTGGTG 2026374
Query 97219 CTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCA 97278
|| | ||| |||||||||||| | | || ||||| ||||| | ||| ||||||
Sbjct 2026373 GCCCCTTCATCCTCTACAAGGATGCTGCCAACCGCAAGTCTAACCAGCAGCACCTGGGCA 2026314
Query 97279 CCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334
| |||||| ||||| || ||||| || || | |||||| | ||||| ||||||
Sbjct 2026313 CTATCAAGTCGTCCAACCTCTGCACTGAGATCATCGAGTACTCTTCTCCCGACGAG 2026258
>seq11
Length=562504
Score = 118 bits (130), Expect = 2e-21
Identities = 396/606 (65%), Gaps = 33/606 (5%)
Strand=Plus/Plus
Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGAT-----C 125313
|||||| | ||||| || | |||||| || || |||| |||||||| || |
Sbjct 36675 GAGAACATTCACTCCGAGACCTACTCTCTCCTCATCGACACCTACATTCGTGACAACGCC 36734
Query 125314 CGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGG 125373
||| || | || ||||| || || ||||| || | || | || || ||||
Sbjct 36735 CGC--CGGCAGTAC---CTCTTCAAGGCCATCGAGACCATCCCCTGCATCAAGAAGAAGG 36789
Query 125374 CTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGG 125433
| | |||| | | || ||||| ||||| || || | || || | || | |
Sbjct 36790 CCGACTGGGCGCTCCGTTGGATTTCCGACGAGCGCTCGTCCTTTGCTGAGCGCCTCATTG 36849
Query 125434 CATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCA 125493
| ||||||||||| || || ||||| || || || ||||| | ||||| |||||||
Sbjct 36850 CGTTCGCCGCCGTCGAAGGTATCTTTTTCTCTGGCTCGTTTGCCTCGATCTTCTGGCTCA 36909
Query 125494 AGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGG 125553
||||||| || ||||||||||| || || | |||||| | || || || |||||||
Sbjct 36910 AGAAGCGTGGCCTCATGCCCGGCCTCACTTTCTCCAACGAGCTCATCTCGCGTGACGAGG 36969
Query 125554 GCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGAT 125613
| || ||| ||||||||| ||| || || || | |||| || |||
Sbjct 36970 GTCTTCACACCGACTTTGCCTGTCTGCTTTT---CACCCATCTCCG--CCG------TCG 37018
Query 125614 CCAGCGATGAAAAGGTCAT---CAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGT 125670
|| || | || |||| || ||| | ||| ||||| | ||| ||||| ||||
Sbjct 37019 CCCGC-ACCCCAACCTCATTGAGAAGATTATCCGCGAGGCCGTCAAGATTGAACAGGAGT 37077
Query 125671 TTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAG-CTAATGTGCGAG 125729
| || ||||| | || || || | || || |||||| || | || |||||| |
Sbjct 37078 TCCTTACCGAGGCGCTCCCCGTGTCGCTCATCGGTATGAAC-GCTGGTCTCATGTGCCAA 37136
Query 125730 TACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTAC 125786
||||| ||||| || || || || || || || ||||| || |||||| |||
Sbjct 37137 TACATTGAGTTCGTCGCCGACCGCCTGCT---CGTCGCCCTTGGCAACGACAAGATCTAC 37193
Query 125787 AACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTT 125846
||| | | ||| ||||| || || ||| | || || || | || ||| |||||||
Sbjct 37194 AACTCGACGAACCCCTTCGACTTTATGGAGATGATCTCTCTGCAAGGCAAGGCCAACTTC 37253
Query 125847 TTCGAG 125852
||||||
Sbjct 37254 TTCGAG 37259
>seq3
Length=3725192
Score = 100 bits (110), Expect = 4e-16
Identities = 112/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 125423 CAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCAT 125482
||||||| | || || || || |||||||||||||| ||||| ||||| |||||
Sbjct 3008121 CAGACTGATCGCCTTTGCATGTGTGGAGGGCATCTTCTTCTCGGGATCATTTGCTGCCAT 3008180
Query 125483 CTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATC 125542
||| |||||||| |||||||| ||||||| || || || | || ||| | || ||
Sbjct 3008181 CTTCTGGCTCAAAAAGCGCGGTCTCATGCGTGGCCTTACATTCTCGAATGAGCTCATCTC 3008240
Query 125543 TCGAGACGAGGGCCTACACTGTGACTTTGC 125572
|||||| ||||| || ||| ||||||||
Sbjct 3008241 TCGAGATGAGGGTCTTCACACCGACTTTGC 3008270
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741058940629280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |