Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1 168 1e-36 seq11 118 2e-21 seq3 100 4e-16 >seq1 Length=4014173 Score = 168 bits (186), Expect = 1e-36 Identities = 366/536 (68%), Gaps = 14/536 (3%) Strand=Plus/Minus Query 96806 AACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACG 96865 ||| ||||| || ||| || | || || |||||| | ||| | || | | || Sbjct 2026786 AACCAACGGTTACTCCAACGGTATCGTCCCCATGCTCCGTGCCTACGACGCGACCGCCCG 2026727 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 |||||| ||||| ||||| || || || || || | ||| ||||| | || || || Sbjct 2026726 TTACGTTGACCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCCATCTACCTTGAGCCCTG 2026667 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 ||| ||||| ||||| ||||| | || | ||||| ||| ||| || |||| || Sbjct 2026666 GCATGCGGATGTTTTCGACTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCG 2026607 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAA--- 97042 || | || |||| || || |||||||| || || | ||||||||||| ||| | Sbjct 2026606 CGCGCGTGATCTGTTCTACGCTCTCTGGGTCCCTGACCTCTTCATGAAGCGTGTCGAGGC 2026547 Query 97043 CGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTG 97102 |||||||| |||||| ||| |||||||||| | || || ||||| |||| | | Sbjct 2026546 CGACGGTG---ACTGGACCCTCATGTGCCCCGCCGAGTGCCCTGGTCTTGCCGA-CGTTC 2026491 Query 97103 GGGCGAAG-AGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGA 97160 || || |||||||| || |||| | ||||||| |||||| | || ||| Sbjct 2026490 ACTCGGAGAAGTTTGAGACCCTGTACCAGAAGTACGAGCGTGAGGGCAAGGGTCGCAAGA 2026431 Query 97161 CGAGTCGATGCACGAGAA-CTGTGGAAGGCCA-TCGTGACGGCTCAGGTAGAGACTGGAA 97218 | | || | || | |||| || ||| |||| || ||| ||| ||| |||||||| Sbjct 2026430 CCA-TCAAGGC-CCAGAAGCTCTGGTTTGCCATTCTTGA-GGCCCAGACCGAGACTGGTG 2026374 Query 97219 CTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCA 97278 || | ||| |||||||||||| | | || ||||| ||||| | ||| |||||| Sbjct 2026373 GCCCCTTCATCCTCTACAAGGATGCTGCCAACCGCAAGTCTAACCAGCAGCACCTGGGCA 2026314 Query 97279 CCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 | |||||| ||||| || ||||| || || | |||||| | ||||| |||||| Sbjct 2026313 CTATCAAGTCGTCCAACCTCTGCACTGAGATCATCGAGTACTCTTCTCCCGACGAG 2026258 >seq11 Length=562504 Score = 118 bits (130), Expect = 2e-21 Identities = 396/606 (65%), Gaps = 33/606 (5%) Strand=Plus/Plus Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGAT-----C 125313 |||||| | ||||| || | |||||| || || |||| |||||||| || | Sbjct 36675 GAGAACATTCACTCCGAGACCTACTCTCTCCTCATCGACACCTACATTCGTGACAACGCC 36734 Query 125314 CGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGG 125373 ||| || | || ||||| || || ||||| || | || | || || |||| Sbjct 36735 CGC--CGGCAGTAC---CTCTTCAAGGCCATCGAGACCATCCCCTGCATCAAGAAGAAGG 36789 Query 125374 CTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGG 125433 | | |||| | | || ||||| ||||| || || | || || | || | | Sbjct 36790 CCGACTGGGCGCTCCGTTGGATTTCCGACGAGCGCTCGTCCTTTGCTGAGCGCCTCATTG 36849 Query 125434 CATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCA 125493 | ||||||||||| || || ||||| || || || ||||| | ||||| ||||||| Sbjct 36850 CGTTCGCCGCCGTCGAAGGTATCTTTTTCTCTGGCTCGTTTGCCTCGATCTTCTGGCTCA 36909 Query 125494 AGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGG 125553 ||||||| || ||||||||||| || || | |||||| | || || || ||||||| Sbjct 36910 AGAAGCGTGGCCTCATGCCCGGCCTCACTTTCTCCAACGAGCTCATCTCGCGTGACGAGG 36969 Query 125554 GCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGAT 125613 | || ||| ||||||||| ||| || || || | |||| || ||| Sbjct 36970 GTCTTCACACCGACTTTGCCTGTCTGCTTTT---CACCCATCTCCG--CCG------TCG 37018 Query 125614 CCAGCGATGAAAAGGTCAT---CAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGT 125670 || || | || |||| || ||| | ||| ||||| | ||| ||||| |||| Sbjct 37019 CCCGC-ACCCCAACCTCATTGAGAAGATTATCCGCGAGGCCGTCAAGATTGAACAGGAGT 37077 Query 125671 TTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAG-CTAATGTGCGAG 125729 | || ||||| | || || || | || || |||||| || | || |||||| | Sbjct 37078 TCCTTACCGAGGCGCTCCCCGTGTCGCTCATCGGTATGAAC-GCTGGTCTCATGTGCCAA 37136 Query 125730 TACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTAC 125786 ||||| ||||| || || || || || || || ||||| || |||||| ||| Sbjct 37137 TACATTGAGTTCGTCGCCGACCGCCTGCT---CGTCGCCCTTGGCAACGACAAGATCTAC 37193 Query 125787 AACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTT 125846 ||| | | ||| ||||| || || ||| | || || || | || ||| ||||||| Sbjct 37194 AACTCGACGAACCCCTTCGACTTTATGGAGATGATCTCTCTGCAAGGCAAGGCCAACTTC 37253 Query 125847 TTCGAG 125852 |||||| Sbjct 37254 TTCGAG 37259 >seq3 Length=3725192 Score = 100 bits (110), Expect = 4e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 125423 CAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCAT 125482 ||||||| | || || || || |||||||||||||| ||||| ||||| ||||| Sbjct 3008121 CAGACTGATCGCCTTTGCATGTGTGGAGGGCATCTTCTTCTCGGGATCATTTGCTGCCAT 3008180 Query 125483 CTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATC 125542 ||| |||||||| |||||||| ||||||| || || || | || ||| | || || Sbjct 3008181 CTTCTGGCTCAAAAAGCGCGGTCTCATGCGTGGCCTTACATTCTCGAATGAGCTCATCTC 3008240 Query 125543 TCGAGACGAGGGCCTACACTGTGACTTTGC 125572 |||||| ||||| || ||| |||||||| Sbjct 3008241 TCGAGATGAGGGTCTTCACACCGACTTTGC 3008270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058940629280