Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03-
01] 28 sequences; 24,510,922 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq11 95.1 1e-14
>seq11
Length=562504
Score = 95.1 bits (104), Expect = 1e-14
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
|| || ||||| || ||| ||||||| | | ||||| || ||||||||||| || |||
Sbjct 29207 TCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGAATACCCTCCTTG 29148
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | ||| || ||||| ||| | ||| |||||| | ||||| || | || |||
Sbjct 29147 TCCTGAATCTTCGCCTTCACGTTGTCGATAGTGTCGGACGACTCGACCTCGAGGGTAATG 29088
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || ||||| || || |||||||||||
Sbjct 29087 GTCTTGCCTGTGAGAGTCTTGACGAAGATCTGCAT 29053
Score = 82.4 bits (90), Expect = 7e-11
Identities = 111/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||| ||||| || ||| ||||||| | | ||||| || || || ||||| || |||
Sbjct 28979 TCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGGATACCCTCCTTG 28920
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | || || ||||| || | ||| ||||| | ||||| || | || |||
Sbjct 28919 TCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCCGACGATTCGACTTCGAGGGTAATG 28860
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || ||||| ||||| || || |||||||||||
Sbjct 28859 GTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 28825
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448291043098080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |