Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3 105 1e-18 seq8 96.9 5e-16 >seq3 Length=3725192 Score = 105 bits (116), Expect = 1e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| || |||||||| || ||||||||||| |||||||| ||||| || |||||||| Sbjct 879832 TCTTCGTGACAACATCCAGGGTATCACCAAGCCCGCTATCCGCCGTCTCGCCCGTCGTGG 879891 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| ||||||||| | || || | |||| || |||| |||| ||| | |||| ||| Sbjct 879892 TGGTGTCAAGCGTATTTCCGGCCTCATCTACGAGGAGACCCGTGGTGTCCTCAAGACCTT 879951 Query 16573 C 16573 | Sbjct 879952 C 879952 >seq8 Length=1441137 Score = 96.9 bits (106), Expect = 5e-16 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || || |||||||| || ||||||||||| |||||||| ||||| || |||||||| Sbjct 1179385 TCTCCGTGACAACATCCAGGGTATCACCAAGCCCGCTATCCGCCGTCTCGCCCGTCGTGG 1179444 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || |||||| | || || | |||| || |||| |||| ||| | |||| ||| Sbjct 1179445 TGGTGTGAAGCGTATTTCCGGCCTCATCTACGAGGAGACCCGTGGTGTCCTCAAGACCTT 1179504 Query 16573 C 16573 | Sbjct 1179505 C 1179505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075174399404