Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq11 132 6e-26 seq1 98.7 1e-15 seq3 96.9 4e-15 >seq11 Length=562504 Score = 132 bits (146), Expect = 6e-26 Identities = 182/252 (72%), Gaps = 3/252 (1%) Strand=Plus/Minus Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359 || ||| || || ||| ||| ||||||||||| | || || |||||||| || || Sbjct 36995 CAGACAGGCAAAGTCGGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGT 36936 Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419 ||| |||||||| ||||||||||| || ||||| || || || || || || ||||| || Sbjct 36935 GAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAA 36876 Query 33420 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCGCT-GTC 33476 ||||| ||||| || || || || ||||| || | ||| || | || ||||| ||| Sbjct 36875 AAAGATACCTTCGACGGCGGCGAACGCAATGAGGCGCTCAGCAAAGGACGAGCGCTCGTC 36816 Query 33477 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33536 ||||| | ||||| ||||||||||| || | || || || || || ||||| Sbjct 36815 GGAAATCCAACGGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGC 36756 Query 33537 ATTAAAGAGATA 33548 || ||||| || Sbjct 36755 CTTGAAGAGGTA 36744 >seq1 Length=4014173 Score = 98.7 bits (108), Expect = 1e-15 Identities = 427/673 (63%), Gaps = 2/673 (0%) Strand=Plus/Plus Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227 ||||| || || | || ||||| | | ||| || ||||| ||| || || ||||| Sbjct 2026505 CCAGGGCACTCGGCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATG 2026564 Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287 ||||| ||||| | ||| ||||| || ||||| | | | | ||||| || || Sbjct 2026565 AAGAGGTCAGGGACCCAGAGAGCGTAGAACAGATCACGCGCGCGAACCTCCTCCTTGCCG 2026624 Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347 ||||| || || ||||| | | || ||| | |||||| || || | ||| ||| Sbjct 2026625 TGGTTCTTGCGGAGGTCAAGGAAGTCGAAAACATCCGCATGCCAGGGCTCAAGGTAGATG 2026684 Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407 || | | ||||| || ||||| || ||||| || | ||| | ||||| | || Sbjct 2026685 GCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCAACGTAACGGGCGGTCGCGTCGTAG 2026744 Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467 | | | ||| || | |||||||| || ||| ||||| || | || || || Sbjct 2026745 GCACGGAGCATGGGGACGATACCGTTGGAGTAACCGTTGGTTCCAGCAATGTACGAGCCC 2026804 Query 63468 CTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63527 |||||||||| || ||| ||||| || || || || | || ||||| ||| Sbjct 2026805 TTGGCACGAATGTTGTGAATGTGGAGACCAATGCCACCAGCAGTCTTGGAGATCTGGGCG 2026864 Query 63528 CATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63587 || || | ||||| ||||| || || || || || |||| | || || Sbjct 2026865 CAAGTCTTGAGGGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATAGCGACGAGGAAG 2026924 Query 63588 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63647 || ||||| || | | ||| || || || || | ||| || |||||||| || Sbjct 2026925 CATGACGACATCTGAGGGTGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGAGTG 2026984 Query 63648 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTAT-ATCCCATTGATG 63706 || | || || | || |||||||||||||| | ||| || | || | || Sbjct 2026985 AAGTAGCGCTCGGACATGAGGTTGTACGTCTCAATGACCTTGTCGATGTTGTCACCG-TG 2027043 Query 63707 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 63766 || || | | |||||||| | ||||||||| || | || | | |||| || || Sbjct 2027044 GATACCGATGGAAACACGCATAATCATGTGCTGCGGACGCTCGGCCACCTTGCCGTCAAT 2027103 Query 63767 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 63826 ||| | || || || | || || ||||| || |||||||| | ||||| || Sbjct 2027104 GCGCAAGAGATATGAGCGCTCGAGGGTCTTGAAACCGAAGTAGTTGTAGGCGAAGTCGCG 2027163 Query 63827 TTCGTAAATAATA 63839 ||||| || ||| Sbjct 2027164 GTCGTAGATTATA 2027176 >seq3 Length=3725192 Score = 96.9 bits (106), Expect = 4e-15 Identities = 151/210 (72%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || || ||| ||| |||||||| |||| | || || || || || || || || Sbjct 3008273 CACGCAAAGTCGGTGTGAAGACCCTCATCTCGAGAGATGAGCTCATTCGAGAATGTAAGG 3008214 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || |||| || || |||||||| ||||| || |||| ||| |||||||| || |||||| Sbjct 3008213 CCACGCATGAGACCGCGCTTTTTGAGCCAGAAGATGGCAGCAAATGATCCCGAGAAGAAG 3008154 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT--GT- 33480 || || || || |||||||| || ||||| | | ||| ||| |||| | || Sbjct 3008153 ATGCCCTCCACACATGCAAAGGCGATCAGTCTGG-TGCGGAAC-GGCA-TGTCGTCCGTG 3008097 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTT 33510 || |||| | ||||| |||||||||||| Sbjct 3008096 ATGTACTTGAGTGCCCAGTCGGCCTTCTTT 3008067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946981968480