Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03-
01] 28 sequences; 24,510,922 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq1 448 1e-120
seq3 100 7e-16
seq11 86.0 2e-11
>seq1
Length=4014173
Score = 448 bits (496), Expect = 1e-120
Identities = 1144/1725 (66%), Gaps = 26/1725 (2%)
Strand=Plus/Minus
Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507
|| || |||||||| ||| | ||||||||| | || |||||||| | | | ||
Sbjct 2027085 GAGCGTCCGCAGCACATGATTATGCGTGTTTCCATCGGTATCCACGGTGACAACATCGAC 2027026
Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTG-TA-TTCACGCACGCCACGCCAA 363565
| ||||| || || || || | || | | | || ||||| ||||| | || |
Sbjct 2027025 AAGGTCATTGAGACGTACAACCTCAT--GTCCGAGCGCTACTTCACTCACGCTTCCCCGA 2026968
Query 363566 CAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGA 363625
| | | ||| ||||| |||| | || |||||||| || ||||| || | ||||
Sbjct 2026967 CCCTCTTCAACGCTGGTACTCCCCACCCTCAGATGTCGTCATGCTTCCTCGTCGCTATGA 2026908
Query 363626 AGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGA 363685
||||||| || ||||| || |||| ||||| || |||| ||| || | || |||||||
Sbjct 2026907 AGGACGACTCGATCGACGGCATCTACGACACCCTCAAGACTTGCGCCCAGATCTCCAAGA 2026848
Query 363686 ATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCG 363745
||| || || |||||| | || ||||| ||||||| || | |||||| |
Sbjct 2026847 CTGCTGGTGGCATTGGTCTCCACATTCACAACATTCGTGCCAAGGGCTCGTACATTGCTG 2026788
Query 363746 GCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGA 363805
| || || ||||| || || | || |||||||| |||| | ||| || ||
Sbjct 2026787 GAACCAACGGTTACTCCAACGGTATCGTCCCCATGCTCCGTGCCTACGACGCGACCGCCC 2026728
Query 363806 GGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTC 363865
| ||||| ||||||||||| |||||| || || ||||| || || || |||||
Sbjct 2026727 GTTACGTTGACCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCCATCTACCTTGAGCCCT 2026668
Query 363866 ATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGC 363925
||||| ||| |||| || || ||||| ||||| || ||| || || ||||| | |
Sbjct 2026667 GGCATGCGGATGTTTTCGACTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTC 2026608
Query 363926 GTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGG 363985
| || |||||||||||||| || || ||||| |||||| || |||||||| || ||||
Sbjct 2026607 GCGCGCGTGATCTGTTCTACGCTCTCTGGGTCCCTGACCTCTTCATGAAGCGTGTCGAGG 2026548
Query 363986 CAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGT--ATG 364043
| | | ||| | ||| | ||||| ||| || || |||||| |||| || |
Sbjct 2026547 CCGACGGTGACTGGACCCTCATGTGCCCCGCCGAGTGCCCTGGTCTTGCCGACGTTCACT 2026488
Query 364044 GGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGAC 364103
|| || | | || | || ||| | ||||| || ||||| |||| ||| |||||
Sbjct 2026487 CGGAGA--AGTTTGAGACCCTGTACCAGAAGTACGAGCGTGAGGGCAAGGGTCGCAAGAC 2026430
Query 364104 AATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACC 364163
|| || |||||||| ||||||||||| | || | |||| ||||| || ||
Sbjct 2026429 CATCAAGGCCCAGAAGCTCTGGTTTGCCATTCTTGAGGCCCAGACCGAGACTGGTGGCCC 2026370
Query 364164 CTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAAT 364223
|| || | ||||| ||| | |||||||||||| |||||||||||||| || || ||
Sbjct 2026369 CTTCATCCTCTACAAGGATGCTGCCAACCGCAAGTCTAACCAGCAGCACCTGGGCACTAT 2026310
Query 364224 TCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGT 364283
|| | |||||| || || ||||| || || ||| | ||||||||||| ||||||
Sbjct 2026309 CAAGTCGTCCAACCTCTGCACTGAGATCATCGAGTACTCTTCTCCCGACGAGGTTGCCGT 2026250
Query 364284 ATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAA-----AG-ATGGTACTTTTGA 364337
|| |||||||| || || || ||||| ||||| || | || | | || | |||
Sbjct 2026249 CTGCAACCTTGCCTCCATTGCCCTTCCCGCGTTCGTGGACTTTGAGAACAGCACCTATGA 2026190
Query 364338 CCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGA 364397
| | || | ||| | || | ||| | || ||| || || ||| || |||
Sbjct 2026189 CTTCAAGAAGCTTCACGAGATCACCAAGGTTGTTACCAAGAACCTTGACTGCGTCATCTC 2026130
Query 364398 CAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGG 364457
|| || || || ||| || ||| || || || ||||| |||||||| | ||
Sbjct 2026129 GCGCAACTACTACCCCGTTCAGGAGGCCAAGAACTCGAACATGCGCCATCGCCCCGTCGG 2026070
Query 364458 TCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCC 364517
||| ||||| ||||| || || |||| || ||| ||| ||| | || || |||||
Sbjct 2026069 TCTCGGTGTCCAGGGTCTTGCCGACGCCTTCATGGCCCTCCGCATGCCCTTCGACTCGCC 2026010
Query 364518 TGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGC 364577
|| |||||| || || ||||||| || || || || || || | ||
Sbjct 2026009 TGCCGCTCGCCAGCTCAACCTCCAGATCTTCGAGACCATCTACCACGCTGCTCTCGAGGC 2025950
Query 364578 TTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTC 364637
|||||||| |||| | |||| ||| || | || ||||| || || | ||
Sbjct 2025949 GTCGTGTGAGATGGCCCAGGAGGTTGGAACCTACCCTTCATACGAGGGTTCGCCCATCTC 2025890
Query 364638 GCAGGGAAAATTCCAGTTTGATCTAT-GGAATGTCACGCCATCTGTCCGATGGAACTGGG 364696
|||||| || |||||||||| || | || || | ||| | | || ||||||||||
Sbjct 2025889 GCAGGGCAAGCTCCAGTTTGACCTTTGGGGCCGTATCCCCA-CCGACCTCTGGAACTGGG 2025831
Query 364697 ATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCA 364756
| ||| ||| || | ||| | || ||||||||| || | || ||||
Sbjct 2025830 ACGAGCTCCGTGAGAAGATCGCCAAGAACGGCGTTCGCAACTCGCTTCTCGTCGCCCCCA 2025771
Query 364757 TGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACA- 364815
|||| || ||||| ||| | ||||| || || |||||||||||||| || |||||
Sbjct 2025770 TGCCTACTGCTTCCACTTCTCAGATTCTTGGCTGGAACGAGTGCTTCGAGCC--TTACAC 2025713
Query 364816 AGCAAT-CTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCT 364874
| || || || || ||||| || || || || || || | ||| || | ||
Sbjct 2025712 CTCGATGCTCTACTCCCGCCGTGTGCTCTCTGGTGACTTCCAGGTCGTCTGCCCCTGGCT 2025653
Query 364875 AGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGC 364934
| || || | ||| || || |||| |||| ||||||| | |||||||
Sbjct 2025652 CCTTCGTGACCTCATCAACCTCGACCTCTGGGACGACAACATGAAGCAGCTCGTCATCGC 2025593
Query 364935 CGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAA 364994
| | |||||| | ||| ||||||| ||| |||| || || | ||| | || |||||
Sbjct 2025592 CTCGGGTGGTTCGATCCAGCACATTCCTGGAATTCCCGATGAGATCAAGTCGATCTACAA 2025533
Query 364995 AACCGTATGGGAAATTTC-CATGCGAA--CTCTCATTGATATGGCGGCCGATCGCGGTGC 365051
|| || ||||| ||||| || ||| | | || || | || ||||| || |||||
Sbjct 2025532 GACTGTCTGGGAGATTTCGCA---GAAGGCAGTTATCGACCTTGCCGCCGACCGTGGTGC 2025476
Query 365052 TTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCT 365111
||||||| ||| |||||| | ||| | | || | | || | | | | ||||
Sbjct 2025475 TTTTATCGACCAGTCGCAGTCGCTCAACATCCACCTGTCGAACCCTTCGTTCTCTCAGCT 2025416
Query 365112 TACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156
|| |||||||| || ||||| ||||| ||||||||||| ||
Sbjct 2025415 CACTTCCATGCACTTTTACGGCTGGAAGCGTGGTCTTAAGACCGG 2025371
>seq3
Length=3725192
Score = 100 bits (110), Expect = 7e-16
Identities = 124/167 (74%), Gaps = 2/167 (1%)
Strand=Plus/Plus
Query 22495 CTTATTGCATTTGC-TGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTT 22553
|| || || ||||| |||| | || ||||| ||||| || ||| ||||| ||| |||||
Sbjct 3008125 CTGATCGCCTTTGCATGTG-TGGAGGGCATCTTCTTCTCGGGATCATTTGCTGCCATCTT 3008183
Query 22554 TTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCG 22613
||||| ||||| || | | |||| || || || || || |||||| | || ||
Sbjct 3008184 CTGGCTCAAAAAGCGCGGTCTCATGCGTGGCCTTACATTCTCGAATGAGCTCATCTCTCG 3008243
Query 22614 AGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATC 22660
||||||||||||||| ||||| |||||||| | || ||| || |||
Sbjct 3008244 AGATGAGGGTCTTCACACCGACTTTGCGTGCCTCCTCTATGGGCATC 3008290
>seq11
Length=562504
Score = 86.0 bits (94), Expect = 2e-11
Identities = 152/221 (69%), Gaps = 3/221 (1%)
Strand=Plus/Plus
Query 22432 ATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCATTC---GCG 22488
|| ||||| ||||| || |||||||| ||||| | | || || || | | ||
Sbjct 36777 ATCAAGAAGAAGGCCGACTGGGCGCTCCGTTGGATTTCCGACGAGCGCTCGTCCTTTGCT 36836
Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548
|| || || ||||| || || | || ||||| || || || ||||| | ||| |
Sbjct 36837 GAGCGCCTCATTGCGTTCGCCGCCGTCGAAGGTATCTTTTTCTCTGGCTCGTTTGCCTCG 36896
Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608
||||| ||||| || || |||| | ||||| || || || || || || ||| | ||
Sbjct 36897 ATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTCACTTTCTCCAACGAGCTCATC 36956
Query 22609 AGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCT 22649
|| || ||||||||||| ||||| ||||| ||| ||||
Sbjct 36957 TCGCGTGACGAGGGTCTTCACACCGACTTTGCCTGTCTGCT 36997
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303353132421896
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |