Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1 448 1e-120 seq3 100 7e-16 seq11 86.0 2e-11 >seq1 Length=4014173 Score = 448 bits (496), Expect = 1e-120 Identities = 1144/1725 (66%), Gaps = 26/1725 (2%) Strand=Plus/Minus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 || || |||||||| ||| | ||||||||| | || |||||||| | | | || Sbjct 2027085 GAGCGTCCGCAGCACATGATTATGCGTGTTTCCATCGGTATCCACGGTGACAACATCGAC 2027026 Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTG-TA-TTCACGCACGCCACGCCAA 363565 | ||||| || || || || | || | | | || ||||| ||||| | || | Sbjct 2027025 AAGGTCATTGAGACGTACAACCTCAT--GTCCGAGCGCTACTTCACTCACGCTTCCCCGA 2026968 Query 363566 CAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGA 363625 | | | ||| ||||| |||| | || |||||||| || ||||| || | |||| Sbjct 2026967 CCCTCTTCAACGCTGGTACTCCCCACCCTCAGATGTCGTCATGCTTCCTCGTCGCTATGA 2026908 Query 363626 AGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGA 363685 ||||||| || ||||| || |||| ||||| || |||| ||| || | || ||||||| Sbjct 2026907 AGGACGACTCGATCGACGGCATCTACGACACCCTCAAGACTTGCGCCCAGATCTCCAAGA 2026848 Query 363686 ATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCG 363745 ||| || || |||||| | || ||||| ||||||| || | |||||| | Sbjct 2026847 CTGCTGGTGGCATTGGTCTCCACATTCACAACATTCGTGCCAAGGGCTCGTACATTGCTG 2026788 Query 363746 GCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGA 363805 | || || ||||| || || | || |||||||| |||| | ||| || || Sbjct 2026787 GAACCAACGGTTACTCCAACGGTATCGTCCCCATGCTCCGTGCCTACGACGCGACCGCCC 2026728 Query 363806 GGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTC 363865 | ||||| ||||||||||| |||||| || || ||||| || || || ||||| Sbjct 2026727 GTTACGTTGACCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCCATCTACCTTGAGCCCT 2026668 Query 363866 ATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGC 363925 ||||| ||| |||| || || ||||| ||||| || ||| || || ||||| | | Sbjct 2026667 GGCATGCGGATGTTTTCGACTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTC 2026608 Query 363926 GTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGG 363985 | || |||||||||||||| || || ||||| |||||| || |||||||| || |||| Sbjct 2026607 GCGCGCGTGATCTGTTCTACGCTCTCTGGGTCCCTGACCTCTTCATGAAGCGTGTCGAGG 2026548 Query 363986 CAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGT--ATG 364043 | | | ||| | ||| | ||||| ||| || || |||||| |||| || | Sbjct 2026547 CCGACGGTGACTGGACCCTCATGTGCCCCGCCGAGTGCCCTGGTCTTGCCGACGTTCACT 2026488 Query 364044 GGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGAC 364103 || || | | || | || ||| | ||||| || ||||| |||| ||| ||||| Sbjct 2026487 CGGAGA--AGTTTGAGACCCTGTACCAGAAGTACGAGCGTGAGGGCAAGGGTCGCAAGAC 2026430 Query 364104 AATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACC 364163 || || |||||||| ||||||||||| | || | |||| ||||| || || Sbjct 2026429 CATCAAGGCCCAGAAGCTCTGGTTTGCCATTCTTGAGGCCCAGACCGAGACTGGTGGCCC 2026370 Query 364164 CTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAAT 364223 || || | ||||| ||| | |||||||||||| |||||||||||||| || || || Sbjct 2026369 CTTCATCCTCTACAAGGATGCTGCCAACCGCAAGTCTAACCAGCAGCACCTGGGCACTAT 2026310 Query 364224 TCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGT 364283 || | |||||| || || ||||| || || ||| | ||||||||||| |||||| Sbjct 2026309 CAAGTCGTCCAACCTCTGCACTGAGATCATCGAGTACTCTTCTCCCGACGAGGTTGCCGT 2026250 Query 364284 ATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAA-----AG-ATGGTACTTTTGA 364337 || |||||||| || || || ||||| ||||| || | || | | || | ||| Sbjct 2026249 CTGCAACCTTGCCTCCATTGCCCTTCCCGCGTTCGTGGACTTTGAGAACAGCACCTATGA 2026190 Query 364338 CCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGA 364397 | | || | ||| | || | ||| | || ||| || || ||| || ||| Sbjct 2026189 CTTCAAGAAGCTTCACGAGATCACCAAGGTTGTTACCAAGAACCTTGACTGCGTCATCTC 2026130 Query 364398 CAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGG 364457 || || || || ||| || ||| || || || ||||| |||||||| | || Sbjct 2026129 GCGCAACTACTACCCCGTTCAGGAGGCCAAGAACTCGAACATGCGCCATCGCCCCGTCGG 2026070 Query 364458 TCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCC 364517 ||| ||||| ||||| || || |||| || ||| ||| ||| | || || ||||| Sbjct 2026069 TCTCGGTGTCCAGGGTCTTGCCGACGCCTTCATGGCCCTCCGCATGCCCTTCGACTCGCC 2026010 Query 364518 TGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGC 364577 || |||||| || || ||||||| || || || || || || | || Sbjct 2026009 TGCCGCTCGCCAGCTCAACCTCCAGATCTTCGAGACCATCTACCACGCTGCTCTCGAGGC 2025950 Query 364578 TTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTC 364637 |||||||| |||| | |||| ||| || | || ||||| || || | || Sbjct 2025949 GTCGTGTGAGATGGCCCAGGAGGTTGGAACCTACCCTTCATACGAGGGTTCGCCCATCTC 2025890 Query 364638 GCAGGGAAAATTCCAGTTTGATCTAT-GGAATGTCACGCCATCTGTCCGATGGAACTGGG 364696 |||||| || |||||||||| || | || || | ||| | | || |||||||||| Sbjct 2025889 GCAGGGCAAGCTCCAGTTTGACCTTTGGGGCCGTATCCCCA-CCGACCTCTGGAACTGGG 2025831 Query 364697 ATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCA 364756 | ||| ||| || | ||| | || ||||||||| || | || |||| Sbjct 2025830 ACGAGCTCCGTGAGAAGATCGCCAAGAACGGCGTTCGCAACTCGCTTCTCGTCGCCCCCA 2025771 Query 364757 TGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACA- 364815 |||| || ||||| ||| | ||||| || || |||||||||||||| || ||||| Sbjct 2025770 TGCCTACTGCTTCCACTTCTCAGATTCTTGGCTGGAACGAGTGCTTCGAGCC--TTACAC 2025713 Query 364816 AGCAAT-CTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCT 364874 | || || || || ||||| || || || || || || | ||| || | || Sbjct 2025712 CTCGATGCTCTACTCCCGCCGTGTGCTCTCTGGTGACTTCCAGGTCGTCTGCCCCTGGCT 2025653 Query 364875 AGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGC 364934 | || || | ||| || || |||| |||| ||||||| | ||||||| Sbjct 2025652 CCTTCGTGACCTCATCAACCTCGACCTCTGGGACGACAACATGAAGCAGCTCGTCATCGC 2025593 Query 364935 CGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAA 364994 | | |||||| | ||| ||||||| ||| |||| || || | ||| | || ||||| Sbjct 2025592 CTCGGGTGGTTCGATCCAGCACATTCCTGGAATTCCCGATGAGATCAAGTCGATCTACAA 2025533 Query 364995 AACCGTATGGGAAATTTC-CATGCGAA--CTCTCATTGATATGGCGGCCGATCGCGGTGC 365051 || || ||||| ||||| || ||| | | || || | || ||||| || ||||| Sbjct 2025532 GACTGTCTGGGAGATTTCGCA---GAAGGCAGTTATCGACCTTGCCGCCGACCGTGGTGC 2025476 Query 365052 TTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCT 365111 ||||||| ||| |||||| | ||| | | || | | || | | | | |||| Sbjct 2025475 TTTTATCGACCAGTCGCAGTCGCTCAACATCCACCTGTCGAACCCTTCGTTCTCTCAGCT 2025416 Query 365112 TACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 || |||||||| || ||||| ||||| ||||||||||| || Sbjct 2025415 CACTTCCATGCACTTTTACGGCTGGAAGCGTGGTCTTAAGACCGG 2025371 >seq3 Length=3725192 Score = 100 bits (110), Expect = 7e-16 Identities = 124/167 (74%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 22495 CTTATTGCATTTGC-TGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTT 22553 || || || ||||| |||| | || ||||| ||||| || ||| ||||| ||| ||||| Sbjct 3008125 CTGATCGCCTTTGCATGTG-TGGAGGGCATCTTCTTCTCGGGATCATTTGCTGCCATCTT 3008183 Query 22554 TTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCG 22613 ||||| ||||| || | | |||| || || || || || |||||| | || || Sbjct 3008184 CTGGCTCAAAAAGCGCGGTCTCATGCGTGGCCTTACATTCTCGAATGAGCTCATCTCTCG 3008243 Query 22614 AGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATC 22660 ||||||||||||||| ||||| |||||||| | || ||| || ||| Sbjct 3008244 AGATGAGGGTCTTCACACCGACTTTGCGTGCCTCCTCTATGGGCATC 3008290 >seq11 Length=562504 Score = 86.0 bits (94), Expect = 2e-11 Identities = 152/221 (69%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 22432 ATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCATTC---GCG 22488 || ||||| ||||| || |||||||| ||||| | | || || || | | || Sbjct 36777 ATCAAGAAGAAGGCCGACTGGGCGCTCCGTTGGATTTCCGACGAGCGCTCGTCCTTTGCT 36836 Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 || || || ||||| || || | || ||||| || || || ||||| | ||| | Sbjct 36837 GAGCGCCTCATTGCGTTCGCCGCCGTCGAAGGTATCTTTTTCTCTGGCTCGTTTGCCTCG 36896 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 ||||| ||||| || || |||| | ||||| || || || || || || ||| | || Sbjct 36897 ATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTCACTTTCTCCAACGAGCTCATC 36956 Query 22609 AGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCT 22649 || || ||||||||||| ||||| ||||| ||| |||| Sbjct 36957 TCGCGTGACGAGGGTCTTCACACCGACTTTGCCTGTCTGCT 36997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353132421896