Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq11 125 7e-24 seq2 95.1 1e-14 seq1 91.5 1e-13 >seq11 Length=562504 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | |||||||||||| || |||||||| || Sbjct 29051 CCACCACGGAGACGGAGGACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAG 28992 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| ||||||||||| || |||| | |||||||||||| || ||| Sbjct 28991 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGG 28932 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | || | || || | || |||| Sbjct 28931 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCCGACGATTCGACT 28872 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||||| ||| || || || ||||| || ||||| |||||||| Sbjct 28871 TCGAGGGTAATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 28825 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || || || | || | || ||||||||||| |||||||| || Sbjct 29279 CCACCACGCAGGCGGAGAACGAGGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCCGAG 29220 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||| || ||||||||||| || |||| | |||||||||||| ||||| Sbjct 29219 AGGGTACGACCGTCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGA 29160 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || ||| ||| | | || | ||| |||| ||||||| Sbjct 29159 ATACCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATAGTGTCGGACGACTCGACC 29100 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||||| ||| || || || ||||| || ||||| |||||||| Sbjct 29099 TCGAGGGTAATGGTCTTGCCTGTGAGAGTCTTGACGAAGATCTGCAT 29053 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | ||| || || | || | ||||||||||| ||||||||||| ||| Sbjct 29508 GCCTCCACGAAGACGAAGAACAAGGTGCAACGTCGACTCCTTCTGAATGTTGTAGTCGGA 29449 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || || Sbjct 29448 AAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCGGGGGG 29389 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| || ||| ||| | | || | ||| |||| ||||| | Sbjct 29388 AATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATAGTGTCGGACGACTCAAC 29329 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || || || || || || |||||||||||||| Sbjct 29328 TTCAAGAGTGATAGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 29281 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| || || | ||| | |||||||||||| || ||||||||||| Sbjct 28542 CCACCGCGGAGACGGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAG 28483 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| |||||||| || || |||| | |||||||||||| || ||| Sbjct 28482 AGGGTACGACCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGG 28423 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | || || | ||||||| Sbjct 28422 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACC 28363 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222 || | ||| | ||| || || || ||||| || || Sbjct 28362 TCAAGGGTGATGGTCTTGCCCGTAAGAGTCTTGAC 28328 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | |||||||||||| || |||||||| || Sbjct 28823 CCACCACGGAGACGGAGGACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 28764 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| ||||||||||| || |||| | |||||||||||| || ||| Sbjct 28763 AGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGG 28704 Query 131128 ATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 28703 ATGCCCTCCTTGTC 28690 Score = 93.3 bits (102), Expect = 4e-14 Identities = 273/406 (67%), Gaps = 15/406 (4%) Strand=Plus/Plus Query 46187 TCtttttttCTGGCAGTTTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCG 46246 ||||||| |||||| |||||| | ||||| | |||| | ||| ||||||||| Sbjct 36871 TCTTTTTCTCTGGCTCGTTTGCCTCGATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCG 36930 Query 46247 GCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGT 46306 |||| || || ||||||||| || ||||| |||||||| || || || |||||||| | Sbjct 36931 GCCTCACTTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTTCACACCGACTTTGCCT 36990 Query 46307 GTCT-CTACTATAACAC-TCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAG--C 46362 |||| || | | || | || | || || | || || ||| | ||| |||| Sbjct 36991 GTCTGCT--TTTCACCCATCTC-CGC-CGTC--GCCCGCACCCCA-ACCTCATTGAGAAG 37043 Query 46363 ATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCC 46422 || || ||||| || ||||| ||||||| |||| | || || |||| | Sbjct 37044 ATTATCCGCGAGGCCGTCAAGATTGAACAGGAGTTCCTTACCGAGGCGCTCCCCGTGTCG 37103 Query 46423 CTGCTGGGCATGAACGCACAGTC-AATGTGCGACTACATCGAGTTTGTAGCGGACCGACT 46481 || | || |||||||| ||| |||||| | ||||| ||||| || || ||||| || Sbjct 37104 CTCATCGGTATGAACGC-TGGTCTCATGTGCCAATACATTGAGTTCGTCGCCGACCGCCT 37162 Query 46482 GCTCGTGCAGCTTCACCAGCCGAAGCATTTTC-ACGCGCGCAATCCATTTGAGTTTATGA 46540 |||||| ||| | | ||| || | | || || || || || || |||||| Sbjct 37163 GCTCGTCGCCCTTGGCAACGACAAG-ATCTACAACTCGACGAACCCCTTCGACTTTATGG 37221 Query 46541 ACAACATCTCCCTGGAGGGCAAAACTAATTTTTTCGAAAAGCGCGT 46586 | | ||||| ||| | ||||| | || || ||||| |||||| Sbjct 37222 AGATGATCTCTCTGCAAGGCAAGGCCAACTTCTTCGAGTCGCGCGT 37267 >seq2 Length=3730214 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | || | |||||||||||| || |||||||| || Sbjct 3658277 CCACCACGGAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 3658336 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| ||| |||| | ||||||||||| || ||| Sbjct 3658337 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 3658396 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 3658397 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCCACC 3658456 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222 |||| ||| | || || || || || || || || Sbjct 3658457 TCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGAC 3658491 >seq1 Length=4014173 Score = 91.5 bits (100), Expect = 1e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 131070 GGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGAT 131129 |||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||||| Sbjct 637222 GGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGGAT 637163 Query 131130 TCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTC 131189 || || ||||| ||| ||| ||||| | || | || || | ||||||| || Sbjct 637162 GCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTC 637103 Query 131190 GACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222 || ||| | ||| || ||||| || || || || Sbjct 637102 GAGGGTGATGGTCTTGCCGGTGAGGGTCTTAAC 637070 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 51804 CTCTATGTTGCCGAGATCGCCCACGTGTCGCTCGGCGGAGTTGGGTGCGCCGTGGTGTTT 51863 ||| | ||| ||||| ||||| ||||| ||||| | | ||| | ||||| || || Sbjct 3974983 CTCGACGTTTCCGAGGTCGCCGACGTGACGCTCCGACGCCGAGGGACCTCCGTGCTGCTT 3974924 Query 51864 GCCAAGGGGATTAAAGTGCTCGCCGGCGGACGTGCACCCGTTGCTGGTGTCGCCGAACTC 51923 | |||| ||| | || ||||||| |||||||| |||||||||||||| || || | Sbjct 3974923 GTTCTGGGGGTTATAATGGGCGCCGGCAGACGTGCATCCGTTGCTGGTGTCTCCAAAAGC 3974864 Query 51924 GTGCACGTGAAAGCCGTGC 51942 ||| | ||| |||||| || Sbjct 3974863 GTGGATGTGGAAGCCGCGC 3974845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012634795520