Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03-
01] 28 sequences; 24,510,922 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq11 125 7e-24
seq2 95.1 1e-14
seq1 91.5 1e-13
>seq11
Length=562504
Score = 125 bits (138), Expect = 7e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||| || || | ||| | |||||||||||| || |||||||| ||
Sbjct 29051 CCACCACGGAGACGGAGGACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAG 28992
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| || |||||| ||||||||||| || |||| | |||||||||||| || |||
Sbjct 28991 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGG 28932
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||| | | || | || || | || ||||
Sbjct 28931 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCCGACGATTCGACT 28872
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| ||||| ||| || || || ||||| || ||||| ||||||||
Sbjct 28871 TCGAGGGTAATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 28825
Score = 125 bits (138), Expect = 7e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| || || || | || | || ||||||||||| |||||||| ||
Sbjct 29279 CCACCACGCAGGCGGAGAACGAGGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCCGAG 29220
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| || ||| || ||||||||||| || |||| | |||||||||||| |||||
Sbjct 29219 AGGGTACGACCGTCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGA 29160
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| || ||| ||| | | || | ||| |||| |||||||
Sbjct 29159 ATACCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATAGTGTCGGACGACTCGACC 29100
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| ||||| ||| || || || ||||| || ||||| ||||||||
Sbjct 29099 TCGAGGGTAATGGTCTTGCCTGTGAGAGTCTTGACGAAGATCTGCAT 29053
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
||| || || | ||| || || | || | ||||||||||| ||||||||||| |||
Sbjct 29508 GCCTCCACGAAGACGAAGAACAAGGTGCAACGTCGACTCCTTCTGAATGTTGTAGTCGGA 29449
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
| ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||
Sbjct 29448 AAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCGGGGGG 29389
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
|| || || ||||| || ||| ||| | | || | ||| |||| ||||| |
Sbjct 29388 AATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATAGTGTCGGACGACTCAAC 29329
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | || | || || || || || || || ||||||||||||||
Sbjct 29328 TTCAAGAGTGATAGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 29281
Score = 109 bits (120), Expect = 5e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|||||||| | ||| || || | ||| | |||||||||||| || |||||||||||
Sbjct 28542 CCACCGCGGAGACGGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAG 28483
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| || |||||| |||||||| || || |||| | |||||||||||| || |||
Sbjct 28482 AGGGTACGACCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGG 28423
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| || || ||||| | || | || || | |||||||
Sbjct 28422 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACC 28363
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222
|| | ||| | ||| || || || ||||| || ||
Sbjct 28362 TCAAGGGTGATGGTCTTGCCCGTAAGAGTCTTGAC 28328
Score = 98.7 bits (108), Expect = 9e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||| || || | ||| | |||||||||||| || |||||||| ||
Sbjct 28823 CCACCACGGAGACGGAGGACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 28764
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| || |||||| ||||||||||| || |||| | |||||||||||| || |||
Sbjct 28763 AGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGG 28704
Query 131128 ATTCCTTCTTTGTC 131141
|| || || |||||
Sbjct 28703 ATGCCCTCCTTGTC 28690
Score = 93.3 bits (102), Expect = 4e-14
Identities = 273/406 (67%), Gaps = 15/406 (4%)
Strand=Plus/Plus
Query 46187 TCtttttttCTGGCAGTTTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCG 46246
||||||| |||||| |||||| | ||||| | |||| | ||| |||||||||
Sbjct 36871 TCTTTTTCTCTGGCTCGTTTGCCTCGATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCG 36930
Query 46247 GCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGT 46306
|||| || || ||||||||| || ||||| |||||||| || || || |||||||| |
Sbjct 36931 GCCTCACTTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTTCACACCGACTTTGCCT 36990
Query 46307 GTCT-CTACTATAACAC-TCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAG--C 46362
|||| || | | || | || | || || | || || ||| | ||| ||||
Sbjct 36991 GTCTGCT--TTTCACCCATCTC-CGC-CGTC--GCCCGCACCCCA-ACCTCATTGAGAAG 37043
Query 46363 ATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCC 46422
|| || ||||| || ||||| ||||||| |||| | || || |||| |
Sbjct 37044 ATTATCCGCGAGGCCGTCAAGATTGAACAGGAGTTCCTTACCGAGGCGCTCCCCGTGTCG 37103
Query 46423 CTGCTGGGCATGAACGCACAGTC-AATGTGCGACTACATCGAGTTTGTAGCGGACCGACT 46481
|| | || |||||||| ||| |||||| | ||||| ||||| || || ||||| ||
Sbjct 37104 CTCATCGGTATGAACGC-TGGTCTCATGTGCCAATACATTGAGTTCGTCGCCGACCGCCT 37162
Query 46482 GCTCGTGCAGCTTCACCAGCCGAAGCATTTTC-ACGCGCGCAATCCATTTGAGTTTATGA 46540
|||||| ||| | | ||| || | | || || || || || || ||||||
Sbjct 37163 GCTCGTCGCCCTTGGCAACGACAAG-ATCTACAACTCGACGAACCCCTTCGACTTTATGG 37221
Query 46541 ACAACATCTCCCTGGAGGGCAAAACTAATTTTTTCGAAAAGCGCGT 46586
| | ||||| ||| | ||||| | || || ||||| ||||||
Sbjct 37222 AGATGATCTCTCTGCAAGGCAAGGCCAACTTCTTCGAGTCGCGCGT 37267
>seq2
Length=3730214
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | || || || | || | |||||||||||| || |||||||| ||
Sbjct 3658277 CCACCACGGAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 3658336
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| ||||| ||||||||||| ||| |||| | ||||||||||| || |||
Sbjct 3658337 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 3658396
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||||| | || | || |||| ||||| |
Sbjct 3658397 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCCACC 3658456
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222
|||| ||| | || || || || || || || ||
Sbjct 3658457 TCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGAC 3658491
>seq1
Length=4014173
Score = 91.5 bits (100), Expect = 1e-13
Identities = 112/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 131070 GGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGAT 131129
|||||| |||||| ||||||||||| ||| |||| | |||||||||||| || |||||
Sbjct 637222 GGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGGAT 637163
Query 131130 TCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTC 131189
|| || ||||| ||| ||| ||||| | || | || || | ||||||| ||
Sbjct 637162 GCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTC 637103
Query 131190 GACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222
|| ||| | ||| || ||||| || || || ||
Sbjct 637102 GAGGGTGATGGTCTTGCCGGTGAGGGTCTTAAC 637070
Score = 84.2 bits (92), Expect = 2e-11
Identities = 102/139 (73%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 51804 CTCTATGTTGCCGAGATCGCCCACGTGTCGCTCGGCGGAGTTGGGTGCGCCGTGGTGTTT 51863
||| | ||| ||||| ||||| ||||| ||||| | | ||| | ||||| || ||
Sbjct 3974983 CTCGACGTTTCCGAGGTCGCCGACGTGACGCTCCGACGCCGAGGGACCTCCGTGCTGCTT 3974924
Query 51864 GCCAAGGGGATTAAAGTGCTCGCCGGCGGACGTGCACCCGTTGCTGGTGTCGCCGAACTC 51923
| |||| ||| | || ||||||| |||||||| |||||||||||||| || || |
Sbjct 3974923 GTTCTGGGGGTTATAATGGGCGCCGGCAGACGTGCATCCGTTGCTGGTGTCTCCAAAAGC 3974864
Query 51924 GTGCACGTGAAAGCCGTGC 51942
||| | ||| |||||| ||
Sbjct 3974863 GTGGATGTGGAAGCCGCGC 3974845
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472012634795520
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