Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq11 104 2e-17 >seq11 Length=562504 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || || | |||| ||| |||||||| || ||||||||||||| Sbjct 29507 CCTCCACGAAGACGAAGAACAAGGTGCAACGTCGACTCCTTCTGAATGTTGTAGTCGGAA 29448 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||||| | || |||||||| | || || ||||| ||||| || Sbjct 29447 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCGGGGGGA 29388 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| ||| | | |||||| | | | | ||||||| | ||| | Sbjct 29387 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATAGTGTCGGACGACTCAACT 29328 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||| || || || || || || ||||| ||||||||||| Sbjct 29327 TCAAGAGTGATAGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 29281 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || |||||||||||||| ||||||||||| | | ||| |||| || | || Sbjct 29255 TGAAGTGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGGGTACGACCGTCTTCAAGCTGC 29196 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| ||| | || || ||||| ||||| ||| | ||||| ||||| ||| | | Sbjct 29195 TTGCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTC 29136 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | ||||||| | ||| || | ||| ||||| || || || Sbjct 29135 GCCTTCACGTTGTCGATAGTGTCGGACGACTCGACCTCGAGGGTAATGGTCTTGCCTGTG 29076 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || ||||| || |||||||| Sbjct 29075 AGAGTCTTGACGAAGATCTGCAT 29053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405087861763720