Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03-
01] 28 sequences; 24,510,922 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq11 129 7e-25
seq1 107 2e-18
seq3 87.8 2e-12
>seq11
Length=562504
Score = 129 bits (142), Expect = 7e-25
Identities = 181/252 (72%), Gaps = 3/252 (1%)
Strand=Plus/Minus
Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716
|| ||| || || ||| ||| ||||||||||| | || | |||||||| || ||
Sbjct 36995 CAGACAGGCAAAGTCGGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGT 36936
Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 32776
||| |||||||| ||||||||||| || ||||| || || || ||||| || ||||| ||
Sbjct 36935 GAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAA 36876
Query 32777 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCGCT-GTC 32833
|| || ||||| || || || || ||||| || | ||| || | || ||||| |||
Sbjct 36875 AAAGATACCTTCGACGGCGGCGAACGCAATGAGGCGCTCAGCAAAGGACGAGCGCTCGTC 36816
Query 32834 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893
||||| | ||||| ||||||||||| || | || || || ||||| || ||
Sbjct 36815 GGAAATCCAACGGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGC 36756
Query 32894 ATTAAAGAGATA 32905
|| ||||| ||
Sbjct 36755 CTTGAAGAGGTA 36744
>seq1
Length=4014173
Score = 107 bits (118), Expect = 2e-18
Identities = 431/676 (64%), Gaps = 2/676 (0%)
Strand=Plus/Plus
Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079
|| ||||| || || | || ||||| | | ||| || ||||| ||| || || |||
Sbjct 2026502 AGACCAGGGCACTCGGCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTC 2026561
Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 63139
|| ||||| ||||| | ||| ||||| || ||||| | | | | ||||| ||
Sbjct 2026562 ATGAAGAGGTCAGGGACCCAGAGAGCGTAGAACAGATCACGCGCGCGAACCTCCTCCTTG 2026621
Query 63140 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63199
|| ||||| || || ||||| | | || ||| | |||||| || || | |||
Sbjct 2026622 CCGTGGTTCTTGCGGAGGTCAAGGAAGTCGAAAACATCCGCATGCCAGGGCTCAAGGTAG 2026681
Query 63200 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63259
||||| | | ||||| || ||||| || ||||| || | ||| | ||||| |
Sbjct 2026682 ATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCAACGTAACGGGCGGTCGCGTCG 2026741
Query 63260 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTT 63319
|| | | | ||| || | ||||| ||||| ||| ||||| || | || ||
Sbjct 2026742 TAGGCACGGAGCATGGGGACGATACCGTTGGAGTAACCGTTGGTTCCAGCAATGTACGAG 2026801
Query 63320 CCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63379
|| |||||||||| || ||| ||||| || || || || | || |||||
Sbjct 2026802 CCCTTGGCACGAATGTTGTGAATGTGGAGACCAATGCCACCAGCAGTCTTGGAGATCTGG 2026861
Query 63380 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 63439
||||| || | || || |||||||| || || || ||| |||| | ||
Sbjct 2026862 GCGCAAGTCTTGAGGGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATAGCGACGAGG 2026921
Query 63440 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGA 63499
|| || ||||| || | | ||| || || || || | ||| || |||||||||
Sbjct 2026922 AAGCATGACGACATCTGAGGGTGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGA 2026981
Query 63500 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTAT-ATCCCATTG 63558
|| || | || || | || |||||||||||||| | ||| || | || |
Sbjct 2026982 GTGAAGTAGCGCTCGGACATGAGGTTGTACGTCTCAATGACCTTGTCGATGTTGTCACCG 2027041
Query 63559 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 63618
|| || || | | |||||||| | ||||||||| || | || | | |||| ||
Sbjct 2027042 -TGGATACCGATGGAAACACGCATAATCATGTGCTGCGGACGCTCGGCCACCTTGCCGTC 2027100
Query 63619 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63678
|| ||| | || || || | || || ||||| || |||||||| | |||||
Sbjct 2027101 AATGCGCAAGAGATATGAGCGCTCGAGGGTCTTGAAACCGAAGTAGTTGTAGGCGAAGTC 2027160
Query 63679 TCGTTCGTAAATAATA 63694
|| ||||| || |||
Sbjct 2027161 GCGGTCGTAGATTATA 2027176
>seq3
Length=3725192
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/210 (71%), Gaps = 6/210 (3%)
Strand=Plus/Minus
Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720
|| || || ||| ||| |||||||| |||| | || | || || || || || ||
Sbjct 3008273 CACGCAAAGTCGGTGTGAAGACCCTCATCTCGAGAGATGAGCTCATTCGAGAATGTAAGG 3008214
Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780
|| |||| || || |||||||| ||||| || |||| ||||||||||| || |||||
Sbjct 3008213 CCACGCATGAGACCGCGCTTTTTGAGCCAGAAGATGGCAGCAAATGATCCCGAGAAGAAG 3008154
Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT--GT- 32837
|| || || || |||||||| || ||||| | | || |||| |||| | ||
Sbjct 3008153 ATGCCCTCCACACATGCAAAGGCGATCAGTCT-GGTGCGGAA-CGGC-ATGTCGTCCGTG 3008097
Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTTT 32867
|| |||| | ||||| ||||||||||||
Sbjct 3008096 ATGTACTTGAGTGCCCAGTCGGCCTTCTTT 3008067
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633631778228800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |