Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq11 129 7e-25 seq1 107 2e-18 seq3 87.8 2e-12 >seq11 Length=562504 Score = 129 bits (142), Expect = 7e-25 Identities = 181/252 (72%), Gaps = 3/252 (1%) Strand=Plus/Minus Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716 || ||| || || ||| ||| ||||||||||| | || | |||||||| || || Sbjct 36995 CAGACAGGCAAAGTCGGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGT 36936 Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 32776 ||| |||||||| ||||||||||| || ||||| || || || ||||| || ||||| || Sbjct 36935 GAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAA 36876 Query 32777 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCGCT-GTC 32833 || || ||||| || || || || ||||| || | ||| || | || ||||| ||| Sbjct 36875 AAAGATACCTTCGACGGCGGCGAACGCAATGAGGCGCTCAGCAAAGGACGAGCGCTCGTC 36816 Query 32834 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893 ||||| | ||||| ||||||||||| || | || || || ||||| || || Sbjct 36815 GGAAATCCAACGGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGC 36756 Query 32894 ATTAAAGAGATA 32905 || ||||| || Sbjct 36755 CTTGAAGAGGTA 36744 >seq1 Length=4014173 Score = 107 bits (118), Expect = 2e-18 Identities = 431/676 (64%), Gaps = 2/676 (0%) Strand=Plus/Plus Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079 || ||||| || || | || ||||| | | ||| || ||||| ||| || || ||| Sbjct 2026502 AGACCAGGGCACTCGGCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTC 2026561 Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 63139 || ||||| ||||| | ||| ||||| || ||||| | | | | ||||| || Sbjct 2026562 ATGAAGAGGTCAGGGACCCAGAGAGCGTAGAACAGATCACGCGCGCGAACCTCCTCCTTG 2026621 Query 63140 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63199 || ||||| || || ||||| | | || ||| | |||||| || || | ||| Sbjct 2026622 CCGTGGTTCTTGCGGAGGTCAAGGAAGTCGAAAACATCCGCATGCCAGGGCTCAAGGTAG 2026681 Query 63200 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63259 ||||| | | ||||| || ||||| || ||||| || | ||| | ||||| | Sbjct 2026682 ATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCAACGTAACGGGCGGTCGCGTCG 2026741 Query 63260 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTT 63319 || | | | ||| || | ||||| ||||| ||| ||||| || | || || Sbjct 2026742 TAGGCACGGAGCATGGGGACGATACCGTTGGAGTAACCGTTGGTTCCAGCAATGTACGAG 2026801 Query 63320 CCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63379 || |||||||||| || ||| ||||| || || || || | || ||||| Sbjct 2026802 CCCTTGGCACGAATGTTGTGAATGTGGAGACCAATGCCACCAGCAGTCTTGGAGATCTGG 2026861 Query 63380 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 63439 ||||| || | || || |||||||| || || || ||| |||| | || Sbjct 2026862 GCGCAAGTCTTGAGGGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATAGCGACGAGG 2026921 Query 63440 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGA 63499 || || ||||| || | | ||| || || || || | ||| || ||||||||| Sbjct 2026922 AAGCATGACGACATCTGAGGGTGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGA 2026981 Query 63500 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTAT-ATCCCATTG 63558 || || | || || | || |||||||||||||| | ||| || | || | Sbjct 2026982 GTGAAGTAGCGCTCGGACATGAGGTTGTACGTCTCAATGACCTTGTCGATGTTGTCACCG 2027041 Query 63559 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 63618 || || || | | |||||||| | ||||||||| || | || | | |||| || Sbjct 2027042 -TGGATACCGATGGAAACACGCATAATCATGTGCTGCGGACGCTCGGCCACCTTGCCGTC 2027100 Query 63619 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63678 || ||| | || || || | || || ||||| || |||||||| | ||||| Sbjct 2027101 AATGCGCAAGAGATATGAGCGCTCGAGGGTCTTGAAACCGAAGTAGTTGTAGGCGAAGTC 2027160 Query 63679 TCGTTCGTAAATAATA 63694 || ||||| || ||| Sbjct 2027161 GCGGTCGTAGATTATA 2027176 >seq3 Length=3725192 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/210 (71%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || || ||| ||| |||||||| |||| | || | || || || || || || Sbjct 3008273 CACGCAAAGTCGGTGTGAAGACCCTCATCTCGAGAGATGAGCTCATTCGAGAATGTAAGG 3008214 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 || |||| || || |||||||| ||||| || |||| ||||||||||| || ||||| Sbjct 3008213 CCACGCATGAGACCGCGCTTTTTGAGCCAGAAGATGGCAGCAAATGATCCCGAGAAGAAG 3008154 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT--GT- 32837 || || || || |||||||| || ||||| | | || |||| |||| | || Sbjct 3008153 ATGCCCTCCACACATGCAAAGGCGATCAGTCT-GGTGCGGAA-CGGC-ATGTCGTCCGTG 3008097 Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTTT 32867 || |||| | ||||| |||||||||||| Sbjct 3008096 ATGTACTTGAGTGCCCAGTCGGCCTTCTTT 3008067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631778228800