Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03-
01] 28 sequences; 24,510,922 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq11 104 2e-17
>seq11
Length=562504
Score = 104 bits (114), Expect = 2e-17
Identities = 147/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || |||||| | || || || |||| || |||| || ||||||||
Sbjct 29053 ATGCAGATCTTCGTCAAGACTCTCACAGGCAAGACCATTACCCTCGAGGTCGAGTCGTCC 29112
Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||||||||| |||| || || | ||| ||||| || || ||||| || |||||
Sbjct 29113 GACACTATCGACAACGTGAAGGCGAAGATTCA-GGACAAGGAGGGTATTCCTCCCGACCA 29171
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | || ||||||||||| || | ||||| | ||| || | || |||||
Sbjct 29172 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAAGACGGTCGTACCCTCTCGGACTACAA 29231
Query 25178 TATTCAAAAAGAATCCACGCTACA 25201
|| ||||| || ||||| || ||
Sbjct 29232 CATCCAAAAGGAGTCCACACTTCA 29255
Score = 91.5 bits (100), Expect = 1e-13
Identities = 141/199 (71%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | || || || | ||||| | ||||| ||||||||
Sbjct 29281 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACTATCACTCTTGAAGTTGAGTCGTCC 29340
Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||||||||| |||| || || | ||| ||||| || || ||||| || |||||
Sbjct 29341 GACACTATCGACAACGTGAAGGCGAAGATTCA-GGACAAGGAGGGCATTCCCCCCGACCA 29399
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | || || || ||||| || | || || | |||||| | ||| |||||
Sbjct 29400 GCAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCCGACTACAA 29459
Query 25178 TATTCAAAAAGAATCCACG 25196
||||| || || || |||
Sbjct 29460 CATTCAGAAGGAGTCGACG 29478
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327852126820
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |