Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03-
01] 28 sequences; 24,510,922 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq11 91.5 2e-13
>seq11
Length=562504
Score = 91.5 bits (100), Expect = 2e-13
Identities = 211/318 (66%), Gaps = 0/318 (0%)
Strand=Plus/Minus
Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151
|| ||||||||||| || | ||| ||||| || || || | ||| ||| ||| || |
Sbjct 36991 CAGGCAAAGTCGGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGTGAGG 36932
Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211
|| || | || || || ||||||||||| || || || ||||| ||||| |||||
Sbjct 36931 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAAAAAG 36872
Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTG 93271
|||||||| ||||| || || || | | || || ||||| | | | |
Sbjct 36871 ATACCTTCGACGGCGGCGAACGCAATGAGGCGCTCAGCAAAGGACGAGCGCTCGTCGGAA 36812
Query 93272 ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTA 93331
||||| | ||||| ||||| || ||||| || || || | || ||||| || ||
Sbjct 36811 ATCCAACGGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCCTTG 36752
Query 93332 AATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATT 93391
|| ||||| | || | | || || ||||| || ||||| | ||||| || |
Sbjct 36751 AAGAGGTACTGCCGGCGGGCGTTGTCACGAATGTAGGTGTCGATGAGGAGAGAGTAGGTC 36692
Query 93392 TCAGAATGGACATTCTCC 93409
|| || || | ||||||
Sbjct 36691 TCGGAGTGAATGTTCTCC 36674
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556860605098720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |