Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq11 91.5 2e-13 >seq11 Length=562504 Score = 91.5 bits (100), Expect = 2e-13 Identities = 211/318 (66%), Gaps = 0/318 (0%) Strand=Plus/Minus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || ||||||||||| || | ||| ||||| || || || | ||| ||| ||| || | Sbjct 36991 CAGGCAAAGTCGGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGTGAGG 36932 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 || || | || || || ||||||||||| || || || ||||| ||||| ||||| Sbjct 36931 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAAAAAG 36872 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTG 93271 |||||||| ||||| || || || | | || || ||||| | | | | Sbjct 36871 ATACCTTCGACGGCGGCGAACGCAATGAGGCGCTCAGCAAAGGACGAGCGCTCGTCGGAA 36812 Query 93272 ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTA 93331 ||||| | ||||| ||||| || ||||| || || || | || ||||| || || Sbjct 36811 ATCCAACGGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCCTTG 36752 Query 93332 AATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATT 93391 || ||||| | || | | || || ||||| || ||||| | ||||| || | Sbjct 36751 AAGAGGTACTGCCGGCGGGCGTTGTCACGAATGTAGGTGTCGATGAGGAGAGAGTAGGTC 36692 Query 93392 TCAGAATGGACATTCTCC 93409 || || || | |||||| Sbjct 36691 TCGGAGTGAATGTTCTCC 36674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860605098720