Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1 149 1e-30 seq11 123 5e-23 seq2 107 4e-18 seq3 100 6e-16 >seq1 Length=4014173 Score = 149 bits (164), Expect = 1e-30 Identities = 400/607 (66%), Gaps = 16/607 (3%) Strand=Plus/Plus Query 218505 CATCCCCGTCCCTGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGA 218564 ||| ||| || |||||| | ||||||| ||||| || ||||| | ||| Sbjct 1597589 CATTCCCATCGACGACTTCGTGAACAAGGAACTCATCCTCTTCTCCATGGCTGACAACAT 1597648 Query 218565 GCGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGC 218624 |||||||| || || | ||||||||||||||| || || ||| |||||| || Sbjct 1597649 CCGTTCTATACCATCGGTTGCGGATGGCCTCAAGCCTGGTCAACGCAAGGTCCTCTATGG 1597708 Query 218625 CGCATTCAAGCGGAACCTGGTTCAA----GAAATTAAGGTCGCTCAGTTTTCTGGTTATG 218680 || ||||| ||| | ||| || | ||||| |||||| | |||||||| Sbjct 1597709 TGCTTTCAAAAAGAA----GATCACCTCTGATCTGAAGGTTGCTCAGCTGAGTGGTTATG 1597764 Query 218681 TATCCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCA 218740 | || || | | || || ||||| || |||||||| |||| | || || || Sbjct 1597765 TTTCTGAGCAGACAGCATATCACCACGGCGAACAGAGTCTCCAGGCCACTATCGTGGGTC 1597824 Query 218741 TGGCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTG 218800 | || || ||| |||||||||||||||||| || | || |||||||||||||||| Sbjct 1597825 TCGCGCAAAACTTTGTGGGCAGTAACAACATCAATCTCCTCGAGCCCAACGGTCAGTTTG 1597884 Query 218801 GTTCTCGTCTAT-TGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTG 218859 || |||| | || ||| || |||||| || || | || || || ||||| | Sbjct 1597885 GTACTCG-CAATCAGGGAGGTAAGGATGCAGCGAGCGCTCGTTACATTTTCACAAATATT 1597943 Query 218860 TCGCCCGTGACGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAG 218919 | | | |||| |||| | ||| | ||| ||| || | |||| || ||||||| Sbjct 1597944 CCCCGCATGACTCGCCTCCTCTTCCACAAGGACGACGACCCGATCCTCAAATATCTTGTT 1598003 Query 218920 GACGATGGTTCTTCGATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTA 218979 || |||||| ||| |||||||||| || | ||| | | || || | ||||| Sbjct 1598004 GAAGATGGTGAACAGATCGAGCCCGAGTACTACCTCCCTACCGTACCCTTGGTTCTCGTC 1598063 Query 218980 AATGGTGCCAATGGTATCGGGACAGGGTTCAGTACTGACATTCCTTCTTACAATCCCAAG 219039 || || ||| ||||||| || ||||| | || || ||||| ||||| || | Sbjct 1598064 AACGGCGCCGATGGTATTGGTACAGGCTGGAGCACCTCGATTCCAAGCTACAACCCTGAA 1598123 Query 219040 GACATCATTGACAACGTCAAGCGTCTCATATCTGGCA---AGGAGATGGTACCGATGTCT 219096 ||||| | ||||| || |||||||| ||| | ||||||| | |||| || Sbjct 1598124 GACATTGTCGACAATCTCCGTCGTCTCAT---GCGCAATGAAGAGATGGAAAAGATGACT 1598180 Query 219097 CCGTGGT 219103 || |||| Sbjct 1598181 CCTTGGT 1598187 >seq11 Length=562504 Score = 123 bits (136), Expect = 5e-23 Identities = 293/440 (67%), Gaps = 16/440 (4%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | ||||||||| | |||||| |||||||||||||| || Sbjct 37258 TCGAAGAAGTTGGCCTTGCCTTGCAGAGAGATCATCTCCATAAAGTCGAAGGGGTTCGTC 37199 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| |||| | |||||| || |||| | |||||| || || ||||| | Sbjct 37198 GAGTTGTAGATCTTGTCGTTGCCAAGGGCGACGAGCAGGCGGTCGGCGACGAACTCAATG 37139 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACA-AGGAATTGCCTCACAGAT 251741 || || | ||| || ||| |||||| || || | ||||| || | ||||| | Sbjct 37138 TATTGGCACATGAGACCAGCGTTCATACCGATGA-GCGACACGGGGAGCGCCTCGGTAAG 37080 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCT----GTGCCA 251794 ||| |||| ||| | || ||||| | ||| || | | | |||| Sbjct 37079 GAACTCCTGTTCAATCTTGACGGCCTCGCGGATAATCTTCTCAATGAGGTTGGGGTGCGG 37020 Query 251795 GAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCT 251854 | ||| || || | | | | || || | |||| | ||| ||||||| Sbjct 37019 GCGACGGC-------GGAGATGGGTGAAAAGCAGACAGGCAAAGTCGGTGTGAAGACCCT 36967 Query 251855 CGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGA 251914 |||| || ||||| ||||||||| | | ||||| ||||| | ||||| ||| ||| Sbjct 36966 CGTCACGCGAGATGAGCTCGTTGGAGAAAGTGAGGCCGGGCATGAGGCCACGCTTCTTGA 36907 Query 251915 GCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAA 251974 |||||||||| | | ||| || |||||||| | | ||| ||||| | | |||| Sbjct 36906 GCCAGAAGATCGAGGCAAACGAGCCAGAGAAAAAGATACCTTCGACGGCGGCGAACGCAA 36847 Query 251975 CAAGGCGCTCAGCAAACGAC 251994 |||||||||||||| ||| Sbjct 36846 TGAGGCGCTCAGCAAAGGAC 36827 >seq2 Length=3730214 Score = 107 bits (118), Expect = 4e-18 Identities = 138/188 (73%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232 ||| |||| ||||| ||| | || |||||||| || | || |||| || |||||||| Sbjct 2815492 GTCCTTGGTCCCAACGGTTCCGGAAAGTCTACGCTCGTGAAGCTCCTTACCGGCGAGACT 2815551 Query 280233 CAGGCCACTGAGGG--GT-CCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 || ||| |||| || |||| |||||||| || ||| | || | |||||| ||| Sbjct 2815552 GAGCCCAACAAGGGCGGTACCGTCTGGAAGCACCCTAACCTCGTCATTGGTTACGTTGCT 2815611 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349 |||||||||||||||||||| || | ||||| ||| |||||| | | ||||| | Sbjct 2815612 CAGCACGCTTTCCACCACATTGACCAGCACCTTGACTCTACTCCTCTCGAGTACATGCTC 2815671 Query 280350 TGGCGCTA 280357 ||||| || Sbjct 2815672 TGGCGTTA 2815679 Score = 100 bits (110), Expect = 6e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 ||||| || || |||||||||||||||||||| || ||| | || ||||| || | ||| Sbjct 2815015 GGTTCGCTCTCCGGTGGTTGGAAGATGAAGCTCGCTCTCGCGCGTGCCATCCTTTTCCGT 2815074 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 ||||| | || || ||||| ||||| |||||||| | ||| | |||||| | ||| Sbjct 2815075 GCCGACATTCTTCTTCTTGACGAGCCCACCAACCATCTCGACGTCGTCAACGTCACTTGG 2815134 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | |||||| ||| || |||| | || |||| || || |||||||| Sbjct 2815135 CTTATCGACTACCTCACCTCGCTCAAGACCTGCACGTCGATCATGGTTTCGCACGACTCG 2815194 Query 279879 GGCTTCCT 279886 | |||||| Sbjct 2815195 GACTTCCT 2815202 >seq3 Length=3725192 Score = 100 bits (110), Expect = 6e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229 ||||| | || ||||| ||||| || ||||| ||||| ||||| |||| || |||||| Sbjct 168494 GGTGTTGTCGGCCCCAACGGTGCCGGCAAGTCGACCCTCATCAAGCTCCTCACCGGCGAG 168435 Query 280230 ACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 || || ||||| |||| ||||| ||| | || | | ||||||||| Sbjct 168434 ACGGTTCCCCAGGAGGGTACCGTGCACAAGCACCCCGCGCTCCGTGTCGGTTACGTCGCC 168375 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349 |||||||| |||||||||||| | | ||||| |||| |||| | || ||||| ||| Sbjct 168374 CAGCACGCGTTCCACCACATCAACCAGCACCTCGACAAGACTGCCGTTCAGTACATCCAG 168315 Query 280350 TGGCGCTA 280357 ||||| || Sbjct 168314 TGGCGTTA 168307 Score = 93.3 bits (102), Expect = 9e-14 Identities = 175/257 (68%), Gaps = 3/257 (1%) Strand=Plus/Minus Query 279702 TCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCC 279761 || || || |||||||||||||||||||| | || |||| ||||| || | ||||| Sbjct 168962 TCGCTCTCTGGTGGTTGGAAGATGAAGCTCGAGCTTGCTCGTGCCATGCTTATCGGTGCC 168903 Query 279762 GATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTA 279821 || | || || || |||||||| ||||||||| ||||| | | || || ||||| Sbjct 168902 GACATTCTCCTCCTCGATGAGCCTACCAACCACTTGGACGTCCAGACTGTTGCTTGGCTT 168843 Query 279822 GTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGC 279881 | | |||||| | || || | | | | | | || ||||| ||||||||||| Sbjct 168842 GAGGACTACCTCAACAACCTTCCCCAGATGACCTGCATGATCGTCTCGCACGACTCTGGT 168783 Query 279882 TTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAAG 279941 ||||| || || || | | ||| || || || ||||| || |||||| | | Sbjct 168782 TTCCTCGACAATGTCTGTACCGACATTATCCATTACGAGCAGAA---GAAGCTTGTCTAC 168726 Query 279942 CACATCGGCAACCTGTC 279958 ||| |||||||| || Sbjct 168725 TACAAGGGCAACCTTTC 168709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836431263548