Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1 416 5e-111 seq11 250 5e-61 seq3 122 2e-22 >seq1 Length=4014173 Score = 416 bits (460), Expect = 5e-111 Identities = 1244/1893 (66%), Gaps = 69/1893 (4%) Strand=Plus/Plus Query 243737 ACGCTGAACTGGACGG-GTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTT 243795 ||| ||||||| | || || | || ||| | ||| | |||||||||||||||||||| Sbjct 2025320 ACGGTGAACTGAATGGCGTTGGCCGACGGGCG-GGTACGAAGGTAGTACATGCCGGTCTT 2025378 Query 243796 GAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGG 243855 || |||| |||| ||| | |||||||| || |||| | | || || Sbjct 2025379 AAGACCACGCTTCCAGCCGTAAAAGTGCATGGAAGTGAGCTGAGAGAAC--GAA----GG 2025432 Query 243856 GTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTC 243915 || ||| |||| || |||||| ||||| |||||||| || | | || || Sbjct 2025433 GT-----TCG-ACAGGTGGATGTTGAGCGACTGCGACTGGTCGATAAAAGCACCACGGTC 2025486 Query 243916 TGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTT 243975 ||||| | | ||| | ||||||| || ||||| | | ||||||||||| | ||| Sbjct 2025487 GGCGGCAAGGTCGATAACTGCCTTCTGCGAAATCTCCCAGACAGTCTTGTAGATCGACTT 2025546 Query 243976 GAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCC-CTTGTGGACGATGAGCTGGG 244034 || | ||||| | || |||| ||| | ||| || | | || |||||| | | Sbjct 2025547 GATCTCATCGGGAATTCCAGGAATGTGCTGGATCGAACCACCCGAGG-CGATGA-CGAGC 2025604 Query 244035 TGCG-CATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTC 244093 ||| |||||| |||| ||| ||| | | | || | | ||| ||| ||| | Sbjct 2025605 TGCTTCATGTTGTCGTCCCAGAGGTCGAGGTTGATGAG-GTCACGA--AGGAGCCAGGGG 2025661 Query 244094 ---ACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGC 244150 || ||||| || || || || ||||| ||||| |||||| | | || ||| Sbjct 2025662 CAGACGACCTGGAAGTCACCAGAGAGCACACGGCGGGAGTAGAGCATCGAGGTGTAAGGC 2025721 Query 244151 TCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACC 244210 |||| || ||| | ||| || ||||| | ||| ||||| |||||||| | || Sbjct 2025722 TCGAAGCACTCGTTCCAGCCAAGAATCTGAGAAGTGGAAGCAGTAGGCATGGGGGCGACG 2025781 Query 244211 AGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCAC 244270 || || ||| | ||||||| | | ||| | |||||||| ||||| ||| Sbjct 2025782 AGAAGCGAGTTGCGAACGCCGTTCTTGGCGATCTTCTCACGGAGCTCGTCCCAGTTCCA- 2025840 Query 244271 ATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTG 244330 |||||| | | | ||||||| | ||||||||| ||| |||| | Sbjct 2025841 --------GAGGTCGGTGGGGATACGGCCCCAAAGGTCAAACTGGAGCTTGCCCTGCGAG 2025892 Query 244331 ACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCG 244390 | ||| |||||||| | ||||||| || | |||||||| || ||| | | Sbjct 2025893 ATGGGCGAACCCTCGTATGAAGGGTAGGTTCCAACCTCCTGGGCCATCTCACACGACGCC 2025952 Query 244391 TCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT-GCC 244449 ||||| || |||| ||||||||||||||||||| ||| | | ||| || | | Sbjct 2025953 TCGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGAGGTTGAGCTGGCGAGCGGCAGGC 2026012 Query 244450 GCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCC 244509 | || |||||| |||| | ||||||| ||||||| || ||||| || |||| || Sbjct 2026013 G-AGTCGAAGGGCATGCGGAGGGCCATGAAGGCGTCGGCAAGACCCTGGACACCGAGACC 2026071 Query 244510 GATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTC 244569 || ||| | || ||| |||| ||| | |||| || | |||||||| |||||| Sbjct 2026072 GACGGGGCGATGGCGCATGTTCGAGTTCTTGGCCTCCTGAACGGGGTAGTAGTTGCGCGA 2026131 Query 244570 GATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTC 244629 ||| || || ||||| ||| | | | || ||| ||| || ||||| Sbjct 2026132 GATGACGCAGTCAAGGTTCTTGGTAACAACCTTGGTGATCTCGTGAAGCTTCTTGAAGTC 2026191 Query 244630 GTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGC 244689 || | | | ||| | ||| || ||| || ||||| | | ||| Sbjct 2026192 ATAGGTGCTG---TTCTCAAAG-------TCC--ACGAACGCGGGAAGGGCAATGGAGGC 2026239 Query 244690 CAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTT 244749 |||||||||||||| ||||| || | | ||||| || ||||| ||||||||||| Sbjct 2026240 AAGGTTGCAGACGGCAACCTCGTCGGGAGAAGAGTACTCGATGATCTCAGTGCAGAGGTT 2026299 Query 244750 ACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTA 244809 ||||||| |||||||||||||| || || |||||| |||| || |||||||| Sbjct 2026300 GGACGACTTGATAGTGCCCAGGTGCTGCTGGTTAGACTTGCGGTTGGCAGCATCCTTGTA 2026359 Query 244810 GAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCT 244869 ||| |||||||| || || |||||| |||||| | || | | |||||| | | Sbjct 2026360 GAGGATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCAAGAATGGCAAACCAGAGCTTCTG 2026419 Query 244870 AGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAA 244929 ||||||| ||| ||||| |||||||||| |||||| |||||||| ||| || Sbjct 2026420 GGCCTTGATGGTCTTGCGACCCTTGCCCTCACGCTCGTACTTCTGGTACAGGGTCTCAAA 2026479 Query 244930 CTCGGGGCCCCAG---ACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCA 244986 || || || || ||| | || || |||||| || ||||||||||| |||| Sbjct 2026480 CT---TCTCCGAGTGAACGTCGGCAAGACCAGGGCACTCGGCGGGGCACATGAGGGTCCA 2026536 Query 244987 CTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAG 245046 || ||| || ||| ||| | || |||||||||||| |||| |||||| || | ||| || Sbjct 2026537 GTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCAGGGACCCAGAGAGCGTAGAACAG 2026596 Query 245047 GTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGAC 245106 || | | | ||| ||| ||| |||||| | || || | ||||| || || Sbjct 2026597 ATCACGCGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAAGTCGAAAAC 2026656 Query 245107 GTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTG 245166 || | ||||||||||| | ||||| || | ||| || || ||||||||||| ||||| Sbjct 2026657 ATCCGCATGCCAGGGCTCAAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTG 2026716 Query 245167 GTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTG 245226 ||| || | || ||||| | || || || | || || || ||||| |||| Sbjct 2026717 GTCAACGTAACGGGCGGTCGCGTCGTAGGCACGGAGCATGGGGACGATACCGTTGGAGTA 2026776 Query 245227 GCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGA---TGGACATGCC 245283 |||||||| || ||||| | ||||||| | | | |||| ||| |||| | || Sbjct 2026777 ACCGTTGGTTCCAGCAATGTACGAGCCCTTGGCACGAATGTTG-TGAATGTGGAGA--CC 2026833 Query 245284 TAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTC 245343 | || || || ||||||||| ||||||| |||||| |||||| ||||| || Sbjct 2026834 AATGCCACCAGCAGTCTTGGAGATCTGGGCGCAAGTCTTGAGGGTGTCGTAGATGCCGTC 2026893 Query 245344 CATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCA 245403 || ||| |||||| || || ||||| || |||| ||| || | ||| | | Sbjct 2026894 GATCGAGTCGTCCTTCATAGCGACGAGGAAGCATGACGACATCTGAGGGTGGGGAGTACC 2026953 Query 245404 CGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTC-GAGAGGAACCCGTACG 245462 | |||||| || || ||| ||||| || ||||||| |||| || | || ||||| Sbjct 2026954 AGCGTTGAAGAGGGTCGGGGAAGCGTGAGTGAAGTAGC-GCTCGGACATGAGGTTGTACG 2027012 Query 245463 TCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGAT-CTGCAGGGCGCACCTCATGAGGGTG 245521 ||| | | |||||||||||| |||||||| | | || || | ||| | || Sbjct 2027013 TCTCAATGACCTTGTCGATGTTGTCACCGTGGATACCGATGGAAACA-CGCATAATCATG 2027071 Query 245522 TGCTGGGGCGTCTCGATGGGTCCCTCGGGTCCCTTGAGCATG---TAGGAGCGCTCGAGC 245578 ||||| || ||| || ||| | | || ||| | || ||||||||||| Sbjct 2027072 TGCTGCGGACGCTC---GGCCACCTTGCCGTCAATGCGCAAGAGATATGAGCGCTCGAGG 2027128 Query 245579 GTCTTGAACCCAAAGTACGAGTAGCCAAAGTCG 245611 |||||||| || ||||| |||| | |||||| Sbjct 2027129 GTCTTGAAACCGAAGTAGTTGTAGGCGAAGTCG 2027161 >seq11 Length=562504 Score = 250 bits (276), Expect = 5e-61 Identities = 380/534 (71%), Gaps = 23/534 (4%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||||||||||| ||||| || |||||||||||||||||||| |||||||||||| Sbjct 36747 CTCTTCAAGGCCATCGAGACCATCCCCTGCATCAAGAAGAAGGCCGACTGGGCGCTCCGT 36806 Query 42669 TGGATCGAGAGTCCCGACGCAACGTTCGGC-------GAGAGGCTGGTAGCCTTTACCGC 42721 ||||| | |||||| | || ||| | ||| | || | || || |||| Sbjct 36807 TGGAT------TTCCGACG-AGCGCTCGTCCTTTGCTGAGCGCCTCATTGCGTTCGCCGC 36859 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGG 42780 |||||| || ||||| ||||| ||| | || ||||| ||||||||||||||| || || Sbjct 36860 CGTCGAAGGTATCTTTTTCTCTGGCTCGTTTGCCTCGATCTTCTGGCTCAAGAAGCGTGG 36919 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 || |||||||| ||||| ||||| ||||| |||||| | |||||||| || || | Sbjct 36920 CCTC-ATGCCCGGCCTCACTTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTTCACA 36978 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGG 42900 ||||||||||| || || ||| | | || | | | | || | | | | | Sbjct 36979 CCGACTTTGCCTGTCTGCTTTTCACCCATCTCCGCCGTCGCCCGCACCCCA---ACCTCA 37035 Query 42901 TCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGC 42960 | | || ||| |||||||| |||| || |||||||||| || || |||| | Sbjct 37036 TTGAGAAGATTATCCGCGAGGCCGTCAAGATTGAACAGGAGTTCCTTACCGAGGCGCTCC 37095 Query 42961 CCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCG 43020 ||||||| || |||| |||||| | ||||||||| | ||||| ||| |||||||| Sbjct 37096 CCGTGTCGCTCATCGGTATGAACGCTGGTCTCATGTGCCAATACATTGAGTTCGTCGCCG 37155 Query 43021 ACCATCTCCT-GT-GCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGA 43078 ||| || || || ||| | || | | |||||||| || || ||||||||| Sbjct 37156 ACCGCCTGCTCGTCGCC--CTTGGCAACGACAAGATCTACAACTCGACGAACCCCTTCGA 37213 Query 43079 CTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 43132 ||||||||||| ||||| || | |||||| ||||||| |||||| |||||| Sbjct 37214 CTTTATGGAGATGATCTCTCTGCAAGGCAAGGCCAACTTCTTCGAGTCGCGCGT 37267 >seq3 Length=3725192 Score = 122 bits (134), Expect = 2e-22 Identities = 220/318 (69%), Gaps = 8/318 (3%) Strand=Plus/Plus Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGG 42704 |||||||| |||||||| ||||| | ||| | |||| ||||| || || Sbjct 3008068 AAGAAGGCCGACTGGGCACTCAAGTACATCACGGA---CGACATGCCGTTCCGCACCAGA 3008124 Query 42705 CTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTC 42764 ||| | |||||| | || |||||||||||||||||||| | || || |||||||| Sbjct 3008125 CTGATCGCCTTTGCATGTGTGGAGGGCATCTTCTTCTCGGGATCATTTGCTGCCATCTTC 3008184 Query 42765 TGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAG 42823 |||||||| || ||| || |||| || || || |||||||| || |||||| | Sbjct 3008185 TGGCTCAAAAAGCGCGGTCTC-ATGCGTGGCCTTACATTCTCGAATGAGCTCATCTCTCG 3008243 Query 42824 GGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAA 42883 || ||||| || || | |||||||| ||||||| ||| | || |||| |||| Sbjct 3008244 AGATGAGGGTCTTCACACCGACTTTGCGTGCCTCC---TCTATGGGCATCTCAAGCACCG 3008300 Query 42884 GCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTT 42943 ||| | ||| || ||||| | || || || ||||| || ||||||||||| Sbjct 3008301 CTGCTCTGACGAGGAAGTTTACACCATCGTGACCGAAGCGGTGGAAATAGAGAAGGAGTT 3008360 Query 42944 CCTCACGCAGTCGCTGCC 42961 ||| ||| | |||| || Sbjct 3008361 CCTGACGGACGCGCTTCC 3008378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338869481280