Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq11 140 8e-28 >seq11 Length=562504 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || ||||| |||| ||| || |||||||| || ||||| | | Sbjct 29279 CCACCACGCAGGCGGAGAACGAGGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCCGAG 29220 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || |||||||| | || || || || ||||| |||||||| || || Sbjct 29219 AGGGTACGACCGTCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGA 29160 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || ||||| |||||||| || |||| ||| ||| || || Sbjct 29159 ATACCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATAGTGTCGGACGACTCGACC 29100 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || ||||| || || |||||||||||||| |||||||| Sbjct 29099 TCGAGGGTAATGGTCTTGCCTGTGAGAGTCTTGACGAAGATCTGCAT 29053 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || ||||||| || || || ||||| || ||||| | | Sbjct 29051 CCACCACGGAGACGGAGGACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAG 28992 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || || || || ||||| |||||||| || ||| Sbjct 28991 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGG 28932 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || ||||| || || || | || |||||| ||| Sbjct 28931 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCCGACGATTCGACT 28872 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || ||||| || || |||||||||||||| |||||||| Sbjct 28871 TCGAGGGTAATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 28825 Score = 127 bits (140), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || || | ||| || || || | ||| || || || || || ||||||| Sbjct 29507 CCTCCACGAAGACGAAGAACAAGGTGCAACGTCGACTCCTTCTGAATGTTGTAGTCGGAA 29448 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || |||||||| |||||||| || || ||| Sbjct 29447 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGG---TCGGGG 29391 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || ||||| || ||||| |||||||| || |||| ||| ||| || Sbjct 29390 GGAATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATAGTGTCGGACGACTCA 29331 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| ||||| || || || ||||||||||| |||||||| Sbjct 29330 ACTTCAAGAGTGATAGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 29281 Score = 104 bits (114), Expect = 6e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || |||||||||| || || || ||||| || || || | | Sbjct 28542 CCACCGCGGAGACGGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAG 28483 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || ||||| || ||||| |||||||| || ||| Sbjct 28482 AGGGTACGACCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGG 28423 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || || || || ||||| || || | || || || || Sbjct 28422 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACC 28363 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || ||||| ||||| || || ||||||||||| Sbjct 28362 TCAAGGGTGATGGTCTTGCCCGTAAGAGTCTTGAC 28328 Score = 86.0 bits (94), Expect = 1e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 269152 ATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTC 269211 ||||||||||| || | ||||||| ||||| || || ||||| || || || | || Sbjct 37107 ATCGGTATGAACGCTGGTCTCATGTGCCAATACATTGAGTTCGTCGCCGACCGCCTGCTC 37166 Query 269212 ACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTA 269271 || || || | || || | ||||| |||| ||| ||||||| ||||||||| | Sbjct 37167 GTCGCCCTTGGCAACGACAAGATCTACAACTCGACGAACCCCTTCGACTTTATGGAGATG 37226 Query 269272 ATTTCGCTCGAAGGAAAGACGAACTTCTTCGA 269303 || || || |||| ||| | ||||||||||| Sbjct 37227 ATCTCTCTGCAAGGCAAGGCCAACTTCTTCGA 37258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653976798984