Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq11 114 3e-20 seq1 114 3e-20 seq3 113 1e-19 >seq11 Length=562504 Score = 114 bits (126), Expect = 3e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 243561 GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 243620 ||| || || |||||| ||| |||||| | || ||||| || ||||| ||||||||| | Sbjct 37103 GCTCATCGGTATGAACGCTGGTCTCATGTGCCAATACATTGAGTTCGTCGCCGACCGCCT 37162 Query 243621 TTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGA 243680 || |||| ||||| | || || | |||||||| | ||||||||| | ||||||||| Sbjct 37163 GCTCGTCGCCCTTGGCAACGACAAGATCTACAACTCGACGAACCCCTTCGACTTTATGGA 37222 Query 243681 GCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGA 243716 | | || || || ||||| || | ||||||||||| Sbjct 37223 GATGATCTCTCTGCAAGGCAAGGCCAACTTCTTCGA 37258 >seq1 Length=4014173 Score = 114 bits (126), Expect = 3e-20 Identities = 324/489 (66%), Gaps = 14/489 (3%) Strand=Plus/Minus Query 297236 TTGTCTACGATGTCTTTTGGATTGTAACTAGGGATATTAGTCGACCAACCGGTACCGATT 297295 ||||| || ||||||| || ||||| || || || || ||| || ||||| || Sbjct 1598137 TTGTCGACAATGTCTTCAGGGTTGTAGCTTGGAATCGAGGTGCTCCAGCCTGTACCAATA 1598078 Query 297296 CCACTCGAACCATTCACCAGAATGCTCGGAATAACAGGCACATAATACTCTGGTTCGATC 297355 ||| | || || || |||| || | ||| | || ||||| || |||||| Sbjct 1598077 CCATCGGCGCCGTTGACGAGAACCAAGGGTACGGTAGGGAGGTAGTACTCGGGCTCGATC 1598018 Query 297356 TTGTCACCGTCATCATACAGATATTTCAGAA---GATTATCGTCCGTATCGACGAAAACC 297412 | ||||| || ||| |||||||| || | | | |||||| | | || || | Sbjct 1598017 TGTTCACCATCTTCAACAAGATATTTGAGGATCGGGTCGTCGTCCTTGTGGAAGAGGA-- 1597960 Query 297413 TGTCGAGTC-TGAGGGTTCAGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACC 297471 | |||||| || ||| | ||||||||||| || || || ||||| ||||||||| Sbjct 1597959 -GGCGAGTCATGCGGGGA-ATATTTGTGAAAATGTAACGAGCGCTCGCTGCATCCTTACC 1597902 Query 297472 ACCCTGCAATCTCGA--ACCGAACTGGCCCTCCGGCAACAACCAG-TTGATGTTATTGCT 297528 ||||| || ||| ||| ||||| || | ||| | | || |||||||| || || Sbjct 1597901 TCCCTG--ATTGCGAGTACCAAACTGACCGTTGGGC-TCGAGGAGATTGATGTTGTTACT 1597845 Query 297529 TCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTG 297588 || ||| | | || || || |||||| || | || ||| |||||| ||||| Sbjct 1597844 GCCCACAAAGTTTTGCGCGAGACCCACGATAGTGGCCTGGAGACTCTGTTCGCCGTGGTG 1597785 Query 297589 ATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAA 297648 ||| || | ||||| | ||| ||||| || | ||| |||||||||| || | || | Sbjct 1597784 ATATGCTGTCTGCTCAGAAACATAACCACTCAGCTGAGCAACCTTCAGATCAGAGGTGAT 1597725 Query 297649 ATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGAC 297708 || |||||||| ||| | || || |||||| ||| |||| ||||| | || Sbjct 1597724 CTTCTTTTTGAAAGCACCATAGAGGACCTTGCGTTGACCAGGCTTGAGGCCATCCGCAAC 1597665 Query 297709 CGACGGAAT 297717 ||| || || Sbjct 1597664 CGATGGTAT 1597656 >seq3 Length=3725192 Score = 113 bits (124), Expect = 1e-19 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 243585 CATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAA 243644 |||| | |||||||| |||||||| || |||||| || || |||| || || |||||||| Sbjct 3008447 CATGTGCCAGTACATGGAATTCGTCGCTGACCGCCTTGTCGTCGCACTGGGCTATGAGAA 3008506 Query 243645 AGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAAC 243704 | |||||| | | || ||||| | || ||||||||||| ||||| ||||| ||| | Sbjct 3008507 GATCTACAACGCAACCAATCCCTTCGACTGGATGGAGCTCATCTCGCTGCAAGGCAAAGC 3008566 Query 243705 TAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGC 243741 ||||| ||||| ||| ||||| || |||||| Sbjct 3008567 CAACTTTTTCGAGTCGCGCGTCAGCTCGTACCAACGC 3008603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879604341800