Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1 233 2e-56 seq11 152 6e-32 seq3 136 5e-27 >seq1 Length=4014173 Score = 233 bits (258), Expect = 2e-56 Identities = 681/1041 (65%), Gaps = 31/1041 (3%) Strand=Plus/Plus Query 114287 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCG 114346 || || ||||| ||||||||||| || | |||||||| | ||| || || || || Sbjct 2026046 TCGGCAAGACCCTGGACACCGAGACCGACGGGGCGATGGCGCATGTTCGAGTTCTTGGCC 2026105 Query 114347 GTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTT 114406 || ||||| || | || | ||| || | | || || ||||| |||||||| Sbjct 2026106 TCCTGAACGGGGTAGTAGTTGCGCGAGATGACGCAGTCAAGGTTCTTGGTAACAACCTTG 2026165 Query 114407 GTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGA 114466 ||||| || |||||||| | | | ||| | ||| |||| | || || ||| Sbjct 2026166 GTGATCTCGTGAAGCTTCTTGAAGTCATAGGTGCTGTTCTCAAAGTCCACGAACGCGGGA 2026225 Query 114467 AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATT 114526 ||||| || || || || || || || | ||| || | || |||||| || || Sbjct 2026226 AGGGCAATGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAGAGTACTCGATGATC 2026285 Query 114527 TCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA 114586 || || || | || || ||| || ||||||| || || || || ||||| ||| Sbjct 2026286 TCAGTGCAGAGGTTGGACGACTTGATAGTGCCCAGGTGCTGCTGGTTAGACTTGCGGTTG 2026345 Query 114587 CACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCC 114646 ||||||||||| || ||| | || || ||||| || |||| || ||||| || Sbjct 2026346 GCAGCATCCTTGTAGAGGATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCAAGAATGGCA 2026405 Query 114647 TTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CTCGTA 114699 ||||| | || | | || | ||| ||| || |||| |||| |||||| Sbjct 2026406 AACCAGAGCTTCTGGGCCTTGA----TGGTCTTG---CGACCCTTGCCCTCACGCTCGTA 2026458 Query 114700 CTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGG--CCTCTGAGAGCCCTGGTGCCTTA 114757 ||| ||| |||| ||||||| || || | | | || | || || || || Sbjct 2026459 CTTCTGGTACAGGGTCTCAAACT--TCTCCGAGTGAACGTCGGCAAGACCAGGGCACTCG 2026516 Query 114758 TCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGG 114817 | ||||| | ||| | ||| | ||| | |||| |||||||||||||||||||| ||| Sbjct 2026517 GCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCAGGG 2026576 Query 114818 ATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGC 114877 | ||||||||| |||| ||||| || |||| | || || | || || || || Sbjct 2026577 ACCCAGAGAGCGTAGAACAGATCACGCGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGG 2026636 Query 114878 AACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCC 114937 | || | ||||| | | |||||| ||||| || || ||||| | || | | || Sbjct 2026637 AGGTCAAGGAAGTCGAAAACATCCGCATGCCAGGGCTCAAGGTAGATGGCAAAGGCACC- 2026695 Query 114938 TTACGACGA------CCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGC 114991 | | || ||| |||||| || || | || || || | | | || ||| Sbjct 2026696 --AGGGCGCTTGTTGCCACCCTGGTCAACGTAACGGGCGGTCGCGTCGTAGGCACGGAGC 2026753 Query 114992 ATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTATTGGCTC 115049 || || | |||||| | || | || || || || ||| ||||| | | |||| | Sbjct 2026754 ATGGGGACGATACCGTTGGAGTAACCGTTGGTTCCAGCAATGTACGAGCCCT--TGGCAC 2026811 Query 115050 TGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCG 115109 | | || ||||| | |||||| || || || ||| ||||| || ||||| | Sbjct 2026812 GAATGTTGTGAATGTGGAGACCAATGCCACCAGCAGTCTTGGAGATCTGGGCGCAAGTCT 2026871 Query 115110 TGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCG 115169 |||| || ||||||| |||||||||||||| |||| | |||| |||||||| || Sbjct 2026872 TGAGGGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATAGCGACGAGGAAGCATGACG 2026931 Query 115170 ACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC 115229 |||| || || || |||||||||||||||||||| || | ||||| |||| | Sbjct 2026932 ACATCTGAGGGTGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGAGTGAAGTAGC 2026991 Query 115230 CTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGA 115289 | |||||| | ||| ||||| | ||| | |||| || ||||| ||||||| Sbjct 2026992 GCTCGGACATGAGGTTGTACGTCTCAATGACCTTGTCGATGTTGTCACCGTGGATACCGA 2027051 Query 115290 TCGAGACCCGCATAAACATGT 115310 | || || ||||||| ||||| Sbjct 2027052 TGGAAACACGCATAATCATGT 2027072 >seq11 Length=562504 Score = 152 bits (168), Expect = 6e-32 Identities = 353/524 (67%), Gaps = 6/524 (1%) Strand=Plus/Minus Query 125768 ACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAAT 125827 || ||| |||||||||||| | ||| || | || ||| |||||||||| || || Sbjct 37267 ACGCGCGACTCGAAGAAGTTGGCCTTGCCTTGCAGAGAGATCATCTCCATAAAGTCGAAG 37208 Query 125828 GGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGACGATCCGAGAC 125886 |||||| | ||||| | || ||| | |||| ||| || || || | ||| Sbjct 37207 GGGTTCGTCGAGTTGTAGATC-TTGTCGTTGCCAAGGGCGACGAGCAGGCGGTCGGCGAC 37149 Query 125887 GTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGG-AGCG 125945 | |||||||||| | |||| ||| ||||||||||||||| ||| ||| |||| Sbjct 37148 GAACTCAATGTATTGGCACATGAGACCAGCGTTCATACCGATGAGCG-ACACGGGGAGCG 37090 Query 125946 CGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGTGAATGGTGT 126005 | || | |||| ||| ||||| | ||||| || || | || | |||| || Sbjct 37089 CCTCGGTAAGGAACTCCTGTTCAATCTTGACGGCCTCGCGGATAATCTTCTCAATGAGGT 37030 Query 126006 CCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCTTGGTGGAGAC 126065 || | | ||| | | |||| || |||||| || ||| |||| Sbjct 37029 TGGGGTGCGGGCGACGGCGGAGATGGGTGAAAAGCAGACAGGCAAAGTCGGTGTGAAGAC 36970 Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 |||||||||| |||||||| || || ||||| || || |||||||| || ||||||| Sbjct 36969 CCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGTGAGGCCGGGCATGAGGCCACGCTTCT 36910 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACG 126185 | | |||||| |||| ||| || || ||||| ||||| || || || ||||||| Sbjct 36909 TGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAAAAAGATACCTTCGACGGCGGCGAACG 36850 Query 126186 CAAAGAGACGCTCAGCAAAGGA-GCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGC 126244 ||| ||| |||||||||||||| | ||| || | || ||| | |||||| | Sbjct 36849 CAATGAGGCGCTCAGCAAAGGACGAGCG-CTCGTCGGAAATCCAACGGAGCGCCCAGTCG 36791 Query 126245 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 126288 ||||| |||| ||| || |||| ||||| ||| || | ||||| Sbjct 36790 GCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCCTTGAAGAG 36747 >seq3 Length=3725192 Score = 136 bits (150), Expect = 5e-27 Identities = 199/275 (72%), Gaps = 10/275 (4%) Strand=Plus/Minus Query 125917 GTTCATACCGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCAC 125976 ||| |||||||| || ||| || ||||||||| | |||| ||||||| |||||||| Sbjct 3008400 GTTGATACCGATAAGCGCACAAGGAAGCGCGTCCGTCAGGAACTCCTTCTCTATTTCCAC 3008341 Query 125977 GGCTTCCCGCACGATGGCGTGAATGGTGTC--CACCCCAGGTCTA-TTGCGCAAAGTC-- 126031 ||||| |||||||| || || || || ||| | ||| | | | | Sbjct 3008340 CGCTTCGGTCACGATGGTGTAAACTTCCTCGTCAGAGCAGCGGTGCTTGAG--ATGCCCA 3008283 Query 126032 TTGAAGAGTTCCACGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTC 126091 | || ||| |||| |||| || ||| |||||||| || || |||||||| |||||| Sbjct 3008282 TAGAGGAGG--CACG-CAAAGTCGGTGTGAAGACCCTCATCTCGAGAGATGAGCTCATTC 3008226 Query 126092 GAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAA 126151 ||||| || || |||||||||| ||||| || | |||||| || ||| |||||| Sbjct 3008225 GAGAATGTAAGGCCACGCATGAGACCGCGCTTTTTGAGCCAGAAGATGGCAGCAAATGAT 3008166 Query 126152 CCCGAGAAGAAGATTCCCTCCACACACGCGAACGC 126186 |||||||||||||| ||||||||||| || || || Sbjct 3008165 CCCGAGAAGAAGATGCCCTCCACACATGCAAAGGC 3008131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353390926240