Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03-
01] 28 sequences; 24,510,922 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq1 233 2e-56
seq11 152 6e-32
seq3 136 5e-27
>seq1
Length=4014173
Score = 233 bits (258), Expect = 2e-56
Identities = 681/1041 (65%), Gaps = 31/1041 (3%)
Strand=Plus/Plus
Query 114287 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCG 114346
|| || ||||| ||||||||||| || | |||||||| | ||| || || || ||
Sbjct 2026046 TCGGCAAGACCCTGGACACCGAGACCGACGGGGCGATGGCGCATGTTCGAGTTCTTGGCC 2026105
Query 114347 GTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTT 114406
|| ||||| || | || | ||| || | | || || ||||| ||||||||
Sbjct 2026106 TCCTGAACGGGGTAGTAGTTGCGCGAGATGACGCAGTCAAGGTTCTTGGTAACAACCTTG 2026165
Query 114407 GTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGA 114466
||||| || |||||||| | | | ||| | ||| |||| | || || |||
Sbjct 2026166 GTGATCTCGTGAAGCTTCTTGAAGTCATAGGTGCTGTTCTCAAAGTCCACGAACGCGGGA 2026225
Query 114467 AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATT 114526
||||| || || || || || || || | ||| || | || |||||| || ||
Sbjct 2026226 AGGGCAATGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAGAGTACTCGATGATC 2026285
Query 114527 TCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA 114586
|| || || | || || ||| || ||||||| || || || || ||||| |||
Sbjct 2026286 TCAGTGCAGAGGTTGGACGACTTGATAGTGCCCAGGTGCTGCTGGTTAGACTTGCGGTTG 2026345
Query 114587 CACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCC 114646
||||||||||| || ||| | || || ||||| || |||| || ||||| ||
Sbjct 2026346 GCAGCATCCTTGTAGAGGATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCAAGAATGGCA 2026405
Query 114647 TTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CTCGTA 114699
||||| | || | | || | ||| ||| || |||| |||| ||||||
Sbjct 2026406 AACCAGAGCTTCTGGGCCTTGA----TGGTCTTG---CGACCCTTGCCCTCACGCTCGTA 2026458
Query 114700 CTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGG--CCTCTGAGAGCCCTGGTGCCTTA 114757
||| ||| |||| ||||||| || || | | | || | || || || ||
Sbjct 2026459 CTTCTGGTACAGGGTCTCAAACT--TCTCCGAGTGAACGTCGGCAAGACCAGGGCACTCG 2026516
Query 114758 TCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGG 114817
| ||||| | ||| | ||| | ||| | |||| |||||||||||||||||||| |||
Sbjct 2026517 GCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCAGGG 2026576
Query 114818 ATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGC 114877
| ||||||||| |||| ||||| || |||| | || || | || || || ||
Sbjct 2026577 ACCCAGAGAGCGTAGAACAGATCACGCGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGG 2026636
Query 114878 AACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCC 114937
| || | ||||| | | |||||| ||||| || || ||||| | || | | ||
Sbjct 2026637 AGGTCAAGGAAGTCGAAAACATCCGCATGCCAGGGCTCAAGGTAGATGGCAAAGGCACC- 2026695
Query 114938 TTACGACGA------CCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGC 114991
| | || ||| |||||| || || | || || || | | | || |||
Sbjct 2026696 --AGGGCGCTTGTTGCCACCCTGGTCAACGTAACGGGCGGTCGCGTCGTAGGCACGGAGC 2026753
Query 114992 ATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTATTGGCTC 115049
|| || | |||||| | || | || || || || ||| ||||| | | |||| |
Sbjct 2026754 ATGGGGACGATACCGTTGGAGTAACCGTTGGTTCCAGCAATGTACGAGCCCT--TGGCAC 2026811
Query 115050 TGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCG 115109
| | || ||||| | |||||| || || || ||| ||||| || ||||| |
Sbjct 2026812 GAATGTTGTGAATGTGGAGACCAATGCCACCAGCAGTCTTGGAGATCTGGGCGCAAGTCT 2026871
Query 115110 TGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCG 115169
|||| || ||||||| |||||||||||||| |||| | |||| |||||||| ||
Sbjct 2026872 TGAGGGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATAGCGACGAGGAAGCATGACG 2026931
Query 115170 ACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC 115229
|||| || || || |||||||||||||||||||| || | ||||| |||| |
Sbjct 2026932 ACATCTGAGGGTGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGAGTGAAGTAGC 2026991
Query 115230 CTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGA 115289
| |||||| | ||| ||||| | ||| | |||| || ||||| |||||||
Sbjct 2026992 GCTCGGACATGAGGTTGTACGTCTCAATGACCTTGTCGATGTTGTCACCGTGGATACCGA 2027051
Query 115290 TCGAGACCCGCATAAACATGT 115310
| || || ||||||| |||||
Sbjct 2027052 TGGAAACACGCATAATCATGT 2027072
>seq11
Length=562504
Score = 152 bits (168), Expect = 6e-32
Identities = 353/524 (67%), Gaps = 6/524 (1%)
Strand=Plus/Minus
Query 125768 ACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAAT 125827
|| ||| |||||||||||| | ||| || | || ||| |||||||||| || ||
Sbjct 37267 ACGCGCGACTCGAAGAAGTTGGCCTTGCCTTGCAGAGAGATCATCTCCATAAAGTCGAAG 37208
Query 125828 GGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGACGATCCGAGAC 125886
|||||| | ||||| | || ||| | |||| ||| || || || | |||
Sbjct 37207 GGGTTCGTCGAGTTGTAGATC-TTGTCGTTGCCAAGGGCGACGAGCAGGCGGTCGGCGAC 37149
Query 125887 GTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGG-AGCG 125945
| |||||||||| | |||| ||| ||||||||||||||| ||| ||| ||||
Sbjct 37148 GAACTCAATGTATTGGCACATGAGACCAGCGTTCATACCGATGAGCG-ACACGGGGAGCG 37090
Query 125946 CGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGTGAATGGTGT 126005
| || | |||| ||| ||||| | ||||| || || | || | |||| ||
Sbjct 37089 CCTCGGTAAGGAACTCCTGTTCAATCTTGACGGCCTCGCGGATAATCTTCTCAATGAGGT 37030
Query 126006 CCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCTTGGTGGAGAC 126065
|| | | ||| | | |||| || |||||| || ||| ||||
Sbjct 37029 TGGGGTGCGGGCGACGGCGGAGATGGGTGAAAAGCAGACAGGCAAAGTCGGTGTGAAGAC 36970
Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125
|||||||||| |||||||| || || ||||| || || |||||||| || |||||||
Sbjct 36969 CCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGTGAGGCCGGGCATGAGGCCACGCTTCT 36910
Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACG 126185
| | |||||| |||| ||| || || ||||| ||||| || || || |||||||
Sbjct 36909 TGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAAAAAGATACCTTCGACGGCGGCGAACG 36850
Query 126186 CAAAGAGACGCTCAGCAAAGGA-GCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGC 126244
||| ||| |||||||||||||| | ||| || | || ||| | |||||| |
Sbjct 36849 CAATGAGGCGCTCAGCAAAGGACGAGCG-CTCGTCGGAAATCCAACGGAGCGCCCAGTCG 36791
Query 126245 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 126288
||||| |||| ||| || |||| ||||| ||| || | |||||
Sbjct 36790 GCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCCTTGAAGAG 36747
>seq3
Length=3725192
Score = 136 bits (150), Expect = 5e-27
Identities = 199/275 (72%), Gaps = 10/275 (4%)
Strand=Plus/Minus
Query 125917 GTTCATACCGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCAC 125976
||| |||||||| || ||| || ||||||||| | |||| ||||||| ||||||||
Sbjct 3008400 GTTGATACCGATAAGCGCACAAGGAAGCGCGTCCGTCAGGAACTCCTTCTCTATTTCCAC 3008341
Query 125977 GGCTTCCCGCACGATGGCGTGAATGGTGTC--CACCCCAGGTCTA-TTGCGCAAAGTC-- 126031
||||| |||||||| || || || || ||| | ||| | | | |
Sbjct 3008340 CGCTTCGGTCACGATGGTGTAAACTTCCTCGTCAGAGCAGCGGTGCTTGAG--ATGCCCA 3008283
Query 126032 TTGAAGAGTTCCACGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTC 126091
| || ||| |||| |||| || ||| |||||||| || || |||||||| ||||||
Sbjct 3008282 TAGAGGAGG--CACG-CAAAGTCGGTGTGAAGACCCTCATCTCGAGAGATGAGCTCATTC 3008226
Query 126092 GAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAA 126151
||||| || || |||||||||| ||||| || | |||||| || ||| ||||||
Sbjct 3008225 GAGAATGTAAGGCCACGCATGAGACCGCGCTTTTTGAGCCAGAAGATGGCAGCAAATGAT 3008166
Query 126152 CCCGAGAAGAAGATTCCCTCCACACACGCGAACGC 126186
|||||||||||||| ||||||||||| || || ||
Sbjct 3008165 CCCGAGAAGAAGATGCCCTCCACACATGCAAAGGC 3008131
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597353390926240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |