Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq11 123 2e-23 seq2 82.4 8e-11 >seq11 Length=562504 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | || || || |||| || || || ||||| |||||||| || | Sbjct 29280 ACCACCACGCAGGCGGAGAACGAGGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCCGA 29221 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||| || ||||||||||||||||||||||| | ||||| ||||||||||||||||| Sbjct 29220 GAGGGTACGACCGTCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGAGG 29161 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || || || || || ||| || || | || || | || || Sbjct 29160 AATACCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATAGTGTCGGACGACTCGAC 29101 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| || | ||| || ||||| || ||||| Sbjct 29100 CTCGAGGGTAATGGTCTTGCCTGTGAGAGTCTTGACGAAGATCTGCAT 29053 Score = 120 bits (132), Expect = 3e-22 Identities = 156/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| ||||| || || || |||||||| || | || ||| || |||| Sbjct 29036 AGGACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGGCCGTCC 28977 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||||||| | ||||| |||||||||||||| || || || || || || Sbjct 28976 TCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGGATACCCTCCTTGTCC 28917 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGG 64409 || || || ||| ||| || | || | ||| || || ||||| | || | || Sbjct 28916 TGGATCTTGGCCTTCACATTGTCGATGGTGT--CCGACGATTCGACTTCGAGGGTAATGG 28859 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||| || | ||| || ||||| || ||||| Sbjct 28858 TCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 28825 Score = 105 bits (116), Expect = 7e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | |||||| || || ||||||||||| || | | ||||| |||| Sbjct 29493 AAGAACAAGGTGCAACGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTC 29434 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || ||||||||||| || | ||||| |||||||||||||| ||||| || || || || Sbjct 29433 CTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTC 29374 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| || || | || || | || ||||| | ||| | || Sbjct 29373 CTGAATCTTCGCCTTCACGTTGTCGATAGTGTCGGACGACTCAACTTCAAGAGTGATAGT 29314 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| || | || || |||||||| ||||| Sbjct 29313 CTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 29281 Score = 102 bits (112), Expect = 8e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | || || ||||||| ||||| || || || ||||||||||| | Sbjct 28543 ACCACCGCGGAGACGGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGA 28484 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||| || |||| || |||||||| |||||| | ||||| |||||||||||||| || Sbjct 28483 GAGGGTACGACCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGCGG 28424 Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359 || || || || || || || || Sbjct 28423 GATGCCCTCCTTGTCCTGAATCTT 28400 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| ||||| || || || |||||||| || | | ||| || |||| Sbjct 28808 AGGACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGACCGTCC 28749 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||||||| | ||||| |||||||||||||| || || || || || || Sbjct 28748 TCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 28689 Query 64352 TGTATTTT 64359 || || || Sbjct 28688 TGGATCTT 28681 >seq2 Length=3730214 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || | | |||||| | || || |||||||||||| Sbjct 3658307 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 3658366 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 || | ||||| |||||||||||||| || || || || || || || || || Sbjct 3658367 GCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 3658419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644625124320