Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03-
01] 28 sequences; 24,510,922 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq11 123 2e-23
seq2 82.4 8e-11
>seq11
Length=562504
Score = 123 bits (136), Expect = 2e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || |||| | || || || |||| || || || ||||| |||||||| || |
Sbjct 29280 ACCACCACGCAGGCGGAGAACGAGGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCCGA 29221
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
|| ||| || ||||||||||||||||||||||| | ||||| |||||||||||||||||
Sbjct 29220 GAGGGTACGACCGTCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGAGG 29161
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||| || || || || || || || ||| || || | || || | || ||
Sbjct 29160 AATACCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATAGTGTCGGACGACTCGAC 29101
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | || | ||||||||| || | ||| || ||||| || |||||
Sbjct 29100 CTCGAGGGTAATGGTCTTGCCTGTGAGAGTCTTGACGAAGATCTGCAT 29053
Score = 120 bits (132), Expect = 3e-22
Identities = 156/214 (73%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || ||||||| ||||| || || || |||||||| || | || ||| || ||||
Sbjct 29036 AGGACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGGCCGTCC 28977
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||||||||||||| | ||||| |||||||||||||| || || || || || ||
Sbjct 28976 TCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGGATACCCTCCTTGTCC 28917
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGG 64409
|| || || ||| ||| || | || | ||| || || ||||| | || | ||
Sbjct 28916 TGGATCTTGGCCTTCACATTGTCGATGGTGT--CCGACGATTCGACTTCGAGGGTAATGG 28859
Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||||| || | ||| || ||||| || |||||
Sbjct 28858 TCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 28825
Score = 105 bits (116), Expect = 7e-18
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || || || | |||||| || || ||||||||||| || | | ||||| ||||
Sbjct 29493 AAGAACAAGGTGCAACGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTC 29434
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
|| ||||||||||| || | ||||| |||||||||||||| ||||| || || || ||
Sbjct 29433 CTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTC 29374
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| || || ||| || || | || || | || ||||| | ||| | ||
Sbjct 29373 CTGAATCTTCGCCTTCACGTTGTCGATAGTGTCGGACGACTCAACTTCAAGAGTGATAGT 29314
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|||||| || | || || |||||||| |||||
Sbjct 29313 CTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 29281
Score = 102 bits (112), Expect = 8e-17
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| ||||| | | || || ||||||| ||||| || || || ||||||||||| |
Sbjct 28543 ACCACCGCGGAGACGGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGA 28484
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
|| ||| || |||| || |||||||| |||||| | ||||| |||||||||||||| ||
Sbjct 28483 GAGGGTACGACCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGCGG 28424
Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359
|| || || || || || || ||
Sbjct 28423 GATGCCCTCCTTGTCCTGAATCTT 28400
Score = 96.9 bits (106), Expect = 3e-15
Identities = 98/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || ||||||| ||||| || || || |||||||| || | | ||| || ||||
Sbjct 28808 AGGACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGACCGTCC 28749
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||||||||||||| | ||||| |||||||||||||| || || || || || ||
Sbjct 28748 TCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 28689
Query 64352 TGTATTTT 64359
|| || ||
Sbjct 28688 TGGATCTT 28681
>seq2
Length=3730214
Score = 82.4 bits (90), Expect = 8e-11
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
||||| || || || |||||||| || | | |||||| | || || ||||||||||||
Sbjct 3658307 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 3658366
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359
|| | ||||| |||||||||||||| || || || || || || || || ||
Sbjct 3658367 GCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 3658419
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499644625124320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |