Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1 264 1e-65 >seq1 Length=4014173 Score = 264 bits (292), Expect = 1e-65 Identities = 993/1543 (64%), Gaps = 52/1543 (3%) Strand=Plus/Minus Query 93896 CCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGA 93955 |||||||||| |||||||| || || || || |||||||| || || ||||| | Sbjct 2026973 CCCCGACCCTCTTCAACGCTGGTACTCCCCACCCTCAGATGTCGTCATGCTTCCTCGTCG 2026914 Query 93956 CGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCA--T 94013 | | |||| |||||| ||| ||| || | ||||| ||||||| ||| |||| ||| | Sbjct 2026913 CTATGAAGGACGACTCGATCGACGGCATCTACGACACCCTCAAG-ACT-TGCGCCCAGAT 2026856 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073 ||| || || || || || || || | ||| || | ||||||| ||| || || Sbjct 2026855 CTCCAAGACTGCTGGTGGCATTGGTCTCCACATTCACAACATTCGTGCCAAGGGCTCGTA 2026796 Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133 ||| || ||||| || ||||||||| ||||||| |||||||| | || || | Sbjct 2026795 CATTGCTGGAACCAACGGTTACTCCAACGGTATCGTCCCCATGCTCCGTGCCT---ACGA 2026739 Query 94134 CGCG---GCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTA 94190 |||| || || ||||| ||||||||||| | | | ||| | || || |||| Sbjct 2026738 CGCGACCGCCCGTTACGTTGACCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCCATCTA 2026679 Query 94191 TCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAA 94250 || ||||||||||| ||||| || | ||| | ||||| || |||||||||||||| Sbjct 2026678 CCTTGAGCCCTGGCATGCGGATGTTTTCGACTTCCTTGACCTCCGCAAGAACCACGGCAA 2026619 Query 94251 CGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAA 94310 || || | || | || || ||||||||||||||||| || ||||| || ||||| Sbjct 2026618 GGAGGAGGTTCGCGCGCGTGATCTGTTCTACGCTCTCTGGGTCCCTGACCTCTTCATGAA 2026559 Query 94311 ACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTC 94370 || |||||| || | ||||| || | || ||| || || || || || | Sbjct 2026558 GCGTGTCGAGGCCGACGGTGACTGGACCCTCATGTGCCCCGCCGAGTGCCCTGGTCTTGC 2026499 Query 94371 CGACGTT--TGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAG 94428 ||||||| ||| | ||||| | |||| ||||| |||||||| Sbjct 2026498 CGACGTTCACTCGGA--GAAGTTTGAGACCCTGTACCAGAAGTACGAGCGTGAGGGCAAG 2026441 Query 94429 GCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAG 94488 | | ||| || | || |||||| ||| | || | || | ||| ||| Sbjct 2026440 GGTCGCAAGACCATCAAGGCCCAGAAGCTCTGGTTTGCCATTCTTGAGGCCCAGACCGAG 2026381 Query 94489 ACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548 || ||| |||| |||| | | |||||| ||| |||| |||||| |||||||||||| Sbjct 2026380 ACTGGTGGCCCCTTCATCCTCTACAAGGATGCTGCCAACCGCAAGTCTAACCAGCAGCAC 2026321 Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608 || || |||||| || || || ||||| ||||| ||||||| ||||||| ||| Sbjct 2026320 CTGGGCACTATCAAGTCGTCCAACCTCTGCACTGAGATCATCGAGTACTCTTCTCCCGAC 2026261 Query 94609 GAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTAC 94668 ||| |||| || || ||||| | |||||| ||| || | |||||| || || Sbjct 2026260 GAGGTTGCCGTCTGCAACCTTGCCTCCATTGCCCTTCCCGCGTTCGTGGACTTTGAGAAC 2026201 Query 94669 A-CGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGT--C 94725 | | ||| |||| || ||||| | || | |||| || | | Sbjct 2026200 AGCACCTATGACTTC----------AAGAAGCTTCACGAGATCAC--CAAGGTTGTTACC 2026153 Query 94726 TTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCA 94785 |||||| || | || ||| |||| ||||||||| | |||||| ||||||| Sbjct 2026152 AAGAACCTTGACTGCGTCATCTCGCGCAACTACTACCCCGTTCAGGAGGCCAAGAACTCG 2026093 Query 94786 AACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATG 94845 ||| || ||||| ||| |||| |||| ||||||||| | || ||||| | || Sbjct 2026092 AACATGCGCCATCGCCCCGTCGGTCTCGGTGTCCAGGGTCTTGCCGACGCCTTCATGGCC 2026033 Query 94846 ATGCGTCTGCCCTACGACT---CTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAA 94902 | || |||||| ||||| ||| || | || | | | || | | || ||||| Sbjct 2026032 CTCCGCATGCCCTTCGACTCGCCTGCCG-CTCGCCAG--CTCAACCTCCAGATCTTCGAG 2025976 Query 94903 AGCATTTATTACGGGGCCATGAAACAATCCGTC----CACTTGGCCAGATCGGACGGCGG 94958 | ||| || ||| || | | | |||| | ||||| ||| | || Sbjct 2025975 ACCATCTACCACGCTGCTCT----CGAGGCGTCGTGTGAGATGGCC---CAGGAGGTTGG 2025923 Query 94959 GCCACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTG 95018 | || || | | || |||||| | ||||||| | ||||| ||||| || Sbjct 2025922 AACCTACCCTTCATACGAGGGTTCGCCCATCTCGCAGGGCAAGCTCCAGTTTGACCTTTG 2025863 Query 95019 GGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACA 95078 ||| | ||| | | || | ||||||| | || || | | | ||| | Sbjct 2025862 GGGCCGTATCCCCACCGACCTCTGGAACTGGGACGAGCTCCGTGAGAAGATCGCCAAGAA 2025803 Query 95079 CGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCT 95138 ||| || ||| |||| || || ||||||||||| || || ||||| | ||||| || Sbjct 2025802 CGGCGTTCGCAACTCGCTTCTCGTCGCCCCCATGCCTACTGCTTCCACTTCTCAGATTCT 2025743 Query 95139 TGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGC 95198 |||| ||||||| ||||| || | |||||| | | ||| | | || |||||| | Sbjct 2025742 TGGCTGGAACGAGTGCTTCGAGCCTTACACCTCGATGCTCTACTCCCGCCGTGTGCTCTC 2025683 Query 95199 CGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTG 95258 || || |||| ||| || | ||||| || ||||| | || | | || Sbjct 2025682 TGGTGACTTCCAGGTCGTCTGCCCCTGGCTCCTTCGTGACCTCATCAACCTCGACCTCTG 2025623 Query 95259 GGGTGACAAGGTCAAGAACCAACTGCTACGCGCC---AACGGCTCCGTCCAGAACATCCC 95315 || ||||| || ||| || || | |||| || || ||||| |||| || Sbjct 2025622 GGACGACAA---CATGAAGCAGCTCGTCATCGCCTCGGGTGGTTCGATCCAGCACATTCC 2025566 Query 95316 GCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGT 95375 ||| || || || |||||| || |||||||||| || |||||||| ||||| | Sbjct 2025565 TGGAATTCCCGATGAGATCAAGTCGATCTACAAGACTGTCTGGGAGATTTCGCAGAAGGC 2025506 Query 95376 GATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAG 95418 | |||||| || |||| ||| || | || ||| |||| Sbjct 2025505 AGTTATCGACCTTGCCGCCGACCGTGGTGCTTTTATCGACCAG 2025463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494723026846880