Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20domesticum_20[genbank_20GCA_5F001599015.1_202016-03- 01] 28 sequences; 24,510,922 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq11 109 5e-19 seq1 107 2e-18 >seq11 Length=562504 Score = 109 bits (120), Expect = 5e-19 Identities = 144/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| ||||||||||| | ||||| ||| || || || || |||| | Sbjct 29246 GACTCCTTTTGGATGTTGTAGTCCGAGAGGGTACGACCGTCTTCAAGCTGCTTGCCGGCA 29187 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| |||||||| ||||| ||||| ||||| || ||||| ||| | || | || | Sbjct 29186 AAGATGAGACGCTGCTGGTCGGGAGGAATACCCTCCTTGTC-CTGAATCTTCGCCTTCAC 29128 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||||| |||||| ||||||| || | || || || || ||||| | Sbjct 29127 GTTG-TCGATAGTGTCGGACGACTCGACCTCGAGGGTAATGGTCTTGCCTGTGAGAGTCT 29069 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 29068 TGACGAAGATCTGCAT 29053 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || | ||| | | | |||||||| || ||||||||||| Sbjct 29051 CCACCACGGAGACGGAGGACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAG 28992 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||||||| || || |||| | |||| |||||||| ||||| || || Sbjct 28991 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGG 28932 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| || || | |||| || | |||||| | ||| || || Sbjct 28931 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTG-TCGATGGTGTCCGACGATTCGAC 28873 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || ||||| ||||| || || || |||||||| Sbjct 28872 TTCGAGGGTAATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 28825 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| | ||| || ||||||||| || || || | Sbjct 29474 GACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCG 29415 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| |||||||| ||||| || || || || || ||||| ||| | || | || | Sbjct 29414 AAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTC-CTGAATCTTCGCCTTCAC 29356 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||||| |||||| || || | || | || || ||||| || || | Sbjct 29355 GTTG-TCGATAGTGTCGGACGACTCAACTTCAAGAGTGATAGTCTTGCCAGTGAGGGTCT 29297 Query 138599 TTACAAAAATCTGCAT 138614 | || ||||||||||| Sbjct 29296 TGACGAAAATCTGCAT 29281 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || | ||| | | | |||||||| || ||||||||||| Sbjct 28823 CCACCACGGAGACGGAGGACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 28764 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||||||| || || |||| | |||| |||||||| ||||| || || Sbjct 28763 AGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGG 28704 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||| | ||||| ||| Sbjct 28703 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCAACC 28644 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAG 138593 || | || | |||||| || || || Sbjct 28643 TCAAGAGTGATCGTTTTGCCGGTAAG 28618 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451 || |||||| | | || |||||| ||||| || | ||||| || ||| |||||| Sbjct 36834 GCTGAGCGCCTCATTGCGTTCGCCGCCGTCGAAGGTATCTTTTTCTCTGGCTCGTTTGCC 36893 Query 52452 GCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTG 52511 | ||||| | | || | | ||| | ||||||||||| || ||| ||||||| | Sbjct 36894 TCGATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTCACTTTCTCCAACGAGCTC 36953 Query 52512 ATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT 52552 || ||||| ||||| || || ||||| |||||||| || || Sbjct 36954 ATCTCGCGTGACGAGGGTCTTCACACCGACTTTGCCTGTCT 36994 >seq1 Length=4014173 Score = 107 bits (118), Expect = 2e-18 Identities = 727/1152 (63%), Gaps = 35/1152 (3%) Strand=Plus/Plus Query 153384 TCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATG 153443 ||| | |||||||| || || ||||||||||| |||||||||| ||||| |||| | Sbjct 2026016 TCGAAGGGCATGCGGAGGGCCATGAAGGCGTCGGCAAGACCCTGGACACCGAGACCGACG 2026075 Query 153444 GGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCT--ATGGGATAGTGATTGCGATCGA 153501 || ||||| | ||| | | | || ||| || | ||| |||| ||||| || Sbjct 2026076 GGGCGATGGCGCATGTTCGAGTTCTTGGC-CTC-CTGAACGGGGTAGTAGTTGCGCGAGA 2026133 Query 153502 TAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCAT 153561 | | || ||||| || || || || ||| | | ||| |||| ||| |||| Sbjct 2026134 TGACGCAGTCAAGGTTCTTGGTAACAACCTTGGTGATCTCGTGAAGCTTCTTGAAGTCAT 2026193 Query 153562 AGGTCATTTCGTCGACG----CGTACGCATCGATTCACGGCAATAGACGCCAGATTACAG 153617 |||| | | || | | || |||| || | |||||| || || || || ||| Sbjct 2026194 AGGTGCTGTTCTCAAAGTCCACGAACGCGG-GA---AGGGCAATGGAGGCAAGGTTGCAG 2026249 Query 153618 ACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTT 153677 ||||| ||| |||| ||||| | |||||| | |||||||||| | || Sbjct 2026250 ACGGCAACCTCGTCGGGAGAAGAGTACTCGATGATCTCAGTGCAGAGGTTGGACGACTTG 2026309 Query 153678 ATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTAC 153737 || ||||| | ||||| || ||||| ||| || || ||| |||| ||| | Sbjct 2026310 ATAGTGCCCAGGTGCTGCTGGTTAGACTTGCGGTTGGCAGCATCCTTGTAGAGGATGAAG 2026369 Query 153738 GGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAGGTCCTGCGCTCGC 153794 || || || |||||| || | || | || ||||| || | ||| || Sbjct 2026370 GGGCCACCAGTCTCGGTCTGGGCCTCAAGAATGGCAAACCAGAGC---TTCTGGGCCTTG 2026426 Query 153795 ACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCG 153854 | || ||| |||||| | |||||| || |||||| |||||||| || Sbjct 2026427 ATGGTCTTGCGACCCTTGCCCTCACGCTCGTACTTCTGGTACAGGGTCTCAAACTTCTCC 2026486 Query 153855 CCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCG 153914 || |||||| || || || |||| || ||||| || | ||| | ||||| Sbjct 2026487 GAGTGAACGTCGGCAAGACCAGGGCACTCGGCGGGGCACATGAGGGTCCAGTCACCGTCG 2026546 Query 153915 GCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCC 153974 || | ||| || |||||| || || || |||||||| ||||| | || || ||||| Sbjct 2026547 GCCTCGACACGCTTCATGAAGAGGTCAGGGACCCAGAGAGCGTAGAACAGATCACGCGC- 2026605 Query 153975 TTGCAATCCTCCGCGC--CCATGTTGCGTTTCAGA--TTGAGCACGCTATAGATGTCGGC 154030 || | ||||| | || || | | || | || | || | | | | || || Sbjct 2026606 --GCGAACCTCCTCCTTGCCGTGGTTC-TTGCGGAGGTCAAGGAAGTCGAAAACATCCGC 2026662 Query 154031 GTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTT---CCGCCCTGATCGAC 154087 |||||||| |||| ||||| ||| | |||||| ||||| || ||||| || || Sbjct 2026663 ATGCCAGGGCTCAAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCAAC 2026722 Query 154088 GTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTT 154147 || || | | || | || | || | |||||| | | ||| | | | ||||| Sbjct 2026723 GTAACGGGCGGTCGCGTCGTAGGCACGGAGCATGGGGACGATACCGTTGGAGTAACCGTT 2026782 Query 154148 GGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCC 154207 ||| | || | ||| ||| || | | || | || | |||||||| || Sbjct 2026783 GGTTCCAGCAATGTACGAGCCCTTGGCACGAATGTTGTGAATGTGGAGACCAATGCCACC 2026842 Query 154208 -GCCGTACTTTGATATGGCAGCGCA-GTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTA 154265 || || ||| || || ||||| ||| || || ||||||||||||||| Sbjct 2026843 AGCAGT-CTTGGAGATCTGGGCGCAAGTCTTG-AGGGTGTCGTAGATGCCGTCGATCGAG 2026900 Query 154266 TCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAA 154325 ||||| | ||| | ||| || || |||| || || | | || || || Sbjct 2026901 TCGTCCTTCATAGCGACGAGGAAGCATGACGACATCTGAGGGTGGGGAGTACCAGCGTTG 2026960 Query 154326 AAGAGGGTGGGACTCGCGTGCGTAAAC-AGTTTTTGGCTCATCATGCGGTACGTTTCGAT 154384 |||||||| || ||||| || || || | || ||| | | |||||| || || Sbjct 2026961 AAGAGGGTCGGGGAAGCGTGAGTGAAGTAGCGCTCGGA-CATGAGGTTGTACGTCTCAAT 2027019 Query 154385 GGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGG 154444 | | | ||||| | || ||||| || |||| | || ||||| | |||||||||||| Sbjct 2027020 GACCTTGTCGATGTTGTCACCGTGGATACCGATGGAAACACGCATAATCATGTGCTGCGG 2027079 Query 154445 ACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGGTTTTGTAACC 154504 ||| ||||| || | |||||| |||||||||| |||||||| ||| |||| Sbjct 2027080 ACGCTCGGCCACCTTGCCGTCAATGCGCAAGAGATATGAGCGCTCGAGGGTCTTGAAACC 2027139 Query 154505 GAAATACTTGTA 154516 ||| || ||||| Sbjct 2027140 GAAGTAGTTGTA 2027151 Score = 86.0 bits (94), Expect = 6e-12 Identities = 105/143 (73%), Gaps = 8/143 (6%) Strand=Plus/Minus Query 57303 CTCGACGTTGCCCAAGTCGCCGACGTGCCGCACGGCCGCGTTGGGAGCGCCGTGTTCGCT 57362 ||||||||| || | |||||||||||| ||| | | ||| |||| | ||||| || Sbjct 3974983 CTCGACGTTTCCGAGGTCGCCGACGTGACGCTCCGACGCCGAGGGACCTCCGTG----CT 3974928 Query 57363 GCCGGT----GGGGTTAAAGTGCTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGA 57418 || || ||||||| | || |||| || |||||||| |||||||||||||| || | Sbjct 3974927 GCTTGTTCTGGGGGTTATAATGGGCGCCGGCAGACGTGCATCCGTTGCTGGTGTCTCCAA 3974868 Query 57419 ACTCGTGAACGTGAAATCCGTGC 57441 | |||| | ||| || ||| || Sbjct 3974867 AAGCGTGGATGTGGAAGCCGCGC 3974845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262226308160